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INSTALL report for REDseq on tokay2

This page was generated on 2020-10-17 11:57:35 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE REDseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1456/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
REDseq 1.34.0
Lihua Julie Zhu
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/REDseq
Branch: RELEASE_3_11
Last Commit: 41dd020
Last Changed Date: 2020-04-27 14:25:44 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: REDseq
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/REDseq_1.34.0.tar.gz && rm -rf REDseq.buildbin-libdir && mkdir REDseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=REDseq.buildbin-libdir REDseq_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL REDseq_1.34.0.zip && rm REDseq_1.34.0.tar.gz REDseq_1.34.0.zip
StartedAt: 2020-10-16 19:23:18 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:24:31 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 73.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/REDseq_1.34.0.tar.gz && rm -rf REDseq.buildbin-libdir && mkdir REDseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=REDseq.buildbin-libdir REDseq_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL REDseq_1.34.0.zip && rm REDseq_1.34.0.tar.gz REDseq_1.34.0.zip
###
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install for i386

* installing *source* package 'REDseq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for requests: '%in%', 'rep.int' when loading 'REDseq'
** help
*** installing help indices
  converting help for package 'REDseq'
    finding HTML links ... done
    REDseq-package                          html  
    assignSeq2REsite                        html  
    binom.test.REDseq                       html  
    buildREmap                              html  
    compareREDseq                           html  
    distanceHistSeq2RE                      html  
    example.REDseq                          html  
    example.assignedREDseq                  html  
    example.map                             html  
    plotCutDistribution                     html  
    searchPattern                           html  
    summarizeByRE                           html  
    summarizeBySeq                          html  
    writeHits                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for requests: '%in%', 'rep.int' when loading 'REDseq'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for requests: '%in%', 'rep.int' when loading 'REDseq'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'REDseq' ...
** testing if installed package can be loaded
No methods found in package 'IRanges' for requests: '%in%', 'rep.int' when loading 'REDseq'
* MD5 sums
packaged installation of 'REDseq' as REDseq_1.34.0.zip
* DONE (REDseq)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'REDseq' successfully unpacked and MD5 sums checked