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BUILD BIN report for PCpheno on tokay2

This page was generated on 2020-10-17 11:57:22 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE PCpheno PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1286/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PCpheno 1.50.0
Nolwenn Le Meur
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/PCpheno
Branch: RELEASE_3_11
Last Commit: 9428ada
Last Changed Date: 2020-04-27 14:16:21 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PCpheno
Version: 1.50.0
Command: rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.50.0.tar.gz
StartedAt: 2020-10-17 11:14:41 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 11:15:25 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 44.8 seconds
RetCode: 0
Status:  OK  
PackageFile: PCpheno_1.50.0.zip
PackageFileSize: 1.166 MiB

Command output

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###
### Running command:
###
###   rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.50.0.tar.gz
###
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install for i386

* installing *source* package 'PCpheno' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
  converting help for package 'PCpheno'
    finding HTML links ... done
    CoHyperGParams-class                    html  
    CoHyperGResult-class                    html  
    Dudley                                  html  
    Giaever                                 html  
    HI                                      html  
    KEGG2SCISI                              html  
    Kastenmayer                             html  
    Lesage                                  html  
    Osterberg                               html  
    PCpheno.package                         html  
    SGDphenoL                               html  
    YEASTOHNOLOG                            html  
    buildFDMat                              html  
    categoryToEntrezBuilder                 html  
    complexStatus                           html  
    deResult-class                          html  
    densityEstimate                         html  
    getDescr                                html  
    getFDgene                               html  
    graphTheory                             html  
    gtResult-class                          html  
    overlap                                 html  
    plot                                    html  
    ppiInteraction                          html  
    reduceM                                 html  
    testResult-class                        html  
    truncName                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package can be loaded from final location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PCpheno' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
* MD5 sums
packaged installation of 'PCpheno' as PCpheno_1.50.0.zip
* DONE (PCpheno)