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INSTALL report for Organism.dplyr on tokay2

This page was generated on 2020-10-17 11:57:20 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE Organism.dplyr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1247/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Organism.dplyr 1.16.0
Martin Morgan
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/Organism.dplyr
Branch: RELEASE_3_11
Last Commit: 38abeff
Last Changed Date: 2020-04-27 15:05:41 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Organism.dplyr
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Organism.dplyr_1.16.0.tar.gz && rm -rf Organism.dplyr.buildbin-libdir && mkdir Organism.dplyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Organism.dplyr.buildbin-libdir Organism.dplyr_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Organism.dplyr_1.16.0.zip && rm Organism.dplyr_1.16.0.tar.gz Organism.dplyr_1.16.0.zip
StartedAt: 2020-10-16 19:28:50 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:30:16 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 86.4 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Organism.dplyr_1.16.0.tar.gz && rm -rf Organism.dplyr.buildbin-libdir && mkdir Organism.dplyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Organism.dplyr.buildbin-libdir Organism.dplyr_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Organism.dplyr_1.16.0.zip && rm Organism.dplyr_1.16.0.tar.gz Organism.dplyr_1.16.0.zip
###
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install for i386

* installing *source* package 'Organism.dplyr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Organism.dplyr'
    finding HTML links ... done
    Genomic-Extractors                      html  
    finding level-2 HTML links ... done

    filter                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCIoeCH/R.INSTALL2e106e76760b/Organism.dplyr/man/filter.Rd:152: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCIoeCH/R.INSTALL2e106e76760b/Organism.dplyr/man/filter.Rd:155: file link 'select,src_organism-method' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    select                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCIoeCH/R.INSTALL2e106e76760b/Organism.dplyr/man/select.Rd:137: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    src                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCIoeCH/R.INSTALL2e106e76760b/Organism.dplyr/man/src.Rd:130: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCIoeCH/R.INSTALL2e106e76760b/Organism.dplyr/man/src.Rd:133: file link 'select,src_organism-method' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    utils                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Organism.dplyr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Organism.dplyr' as Organism.dplyr_1.16.0.zip
* DONE (Organism.dplyr)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'Organism.dplyr' successfully unpacked and MD5 sums checked