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BUILD report for MoPS on tokay2

This page was generated on 2020-10-17 11:57:11 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE MoPS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1121/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MoPS 1.22.0
Philipp Eser
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/MoPS
Branch: RELEASE_3_11
Last Commit: e7b2ef2
Last Changed Date: 2020-04-27 14:40:43 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: MoPS
Version: 1.22.0
Command: chmod a+r MoPS -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MoPS
StartedAt: 2020-10-16 22:57:00 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 22:59:09 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 128.4 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r MoPS -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MoPS
###
##############################################################################
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* checking for file 'MoPS/DESCRIPTION' ... OK
* preparing 'MoPS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MoPS.Rnw' using Sweave
Warning: Package 'MoPS' is deprecated and will be removed from Bioconductor
  version 3.12
1275 linear regressions will be performed. This will take < 5 minutes.
Creating test functions ....
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Fitting of test functions to data ....
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
Warning in if (class(mat) == "ExpressionSet") { :
  the condition has length > 1 and only the first element will be used
8610 linear regressions will be performed. This will take < 5 minutes.
Creating test functions ....
0 %
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Fitting of test functions to data ....
0 %
10 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
20 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
30 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
40 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
50 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
60 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
70 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
80 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
90 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
100 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
Warning in if (class(mat) == "ExpressionSet") { :
  the condition has length > 1 and only the first element will be used
108000 linear regressions will be performed. This will take < 5 minutes.
Creating test functions ....
0 %
10 %
20 %
30 %
40 %
50 %
60 %
70 %
80 %
90 %
100 %
Fitting of test functions to data ....
0 %
10 %
20 %
30 %
40 %
50 %
60 %
70 %
80 %
90 %
100 %

Error: processing vignette 'MoPS.Rnw' failed with diagnostics:
 chunk 18 
Error in ccycle[periodic.ids, ] : subscript out of bounds

--- failed re-building 'MoPS.Rnw'

SUMMARY: processing the following file failed:
  'MoPS.Rnw'

Error: Vignette re-building failed.
Execution halted