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CHECK report for MatrixGenerics on tokay2

This page was generated on 2020-10-17 11:57:00 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE MatrixGenerics PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 996/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MatrixGenerics 1.0.2
Peter Hickey
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/MatrixGenerics
Branch: RELEASE_3_11
Last Commit: a221e4c
Last Changed Date: 2020-05-23 20:48:34 -0400 (Sat, 23 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MatrixGenerics
Version: 1.0.2
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MatrixGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings MatrixGenerics_1.0.2.tar.gz
StartedAt: 2020-10-17 05:41:34 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 05:42:22 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 48.0 seconds
RetCode: 0
Status:  OK  
CheckDir: MatrixGenerics.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MatrixGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings MatrixGenerics_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/MatrixGenerics.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MatrixGenerics/DESCRIPTION' ... OK
* this is package 'MatrixGenerics' version '1.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MatrixGenerics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MatrixGenerics.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MatrixGenerics_1.0.2.tar.gz && rm -rf MatrixGenerics.buildbin-libdir && mkdir MatrixGenerics.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MatrixGenerics.buildbin-libdir MatrixGenerics_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MatrixGenerics_1.0.2.zip && rm MatrixGenerics_1.0.2.tar.gz MatrixGenerics_1.0.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 29024  100 29024    0     0   444k      0 --:--:-- --:--:-- --:--:--  497k

install for i386

* installing *source* package 'MatrixGenerics' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MatrixGenerics'
    finding HTML links ... done
    rowAlls                                 html  
    rowAnyNAs                               html  
    rowAnys                                 html  
    rowAvgsPerColSet                        html  
    rowCollapse                             html  
    rowCounts                               html  
    rowCummaxs                              html  
    rowCummins                              html  
    rowCumprods                             html  
    rowCumsums                              html  
    rowDiffs                                html  
    rowIQRDiffs                             html  
    rowIQRs                                 html  
    rowLogSumExps                           html  
    rowMadDiffs                             html  
    rowMads                                 html  
    rowMaxs                                 html  
    rowMeans2                               html  
    rowMedians                              html  
    rowMins                                 html  
    rowOrderStats                           html  
    rowProds                                html  
    rowQuantiles                            html  
    rowRanges                               html  
    rowRanks                                html  
    rowSdDiffs                              html  
    rowSds                                  html  
    rowSums2                                html  
    rowTabulates                            html  
    rowVarDiffs                             html  
    rowVars                                 html  
    rowWeightedMads                         html  
    rowWeightedMeans                        html  
    rowWeightedMedians                      html  
    rowWeightedSds                          html  
    rowWeightedVars                         html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MatrixGenerics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MatrixGenerics' as MatrixGenerics_1.0.2.zip
* DONE (MatrixGenerics)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MatrixGenerics' successfully unpacked and MD5 sums checked

Tests output

MatrixGenerics.Rcheck/tests_i386/testthat.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MatrixGenerics)
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("MatrixGenerics")
== testthat results  ===========================================================
[ OK: 310 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
   2.35    0.10    2.51 

MatrixGenerics.Rcheck/tests_x64/testthat.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MatrixGenerics)
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("MatrixGenerics")
== testthat results  ===========================================================
[ OK: 310 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
   2.12    0.10    2.29 

Example timings

MatrixGenerics.Rcheck/examples_i386/MatrixGenerics-Ex.timings

nameusersystemelapsed
rowAlls000
rowAnyNAs000
rowAnys000
rowAvgsPerColSet000
rowCollapse000
rowCounts000
rowCummaxs000
rowCummins000
rowCumprods000
rowCumsums000
rowDiffs000
rowIQRDiffs0.010.000.01
rowIQRs000
rowLogSumExps000
rowMadDiffs000
rowMads000
rowMaxs000
rowMeans2000
rowMedians000
rowMins000
rowOrderStats000
rowProds000
rowQuantiles000
rowRanges000
rowRanks000
rowSdDiffs000
rowSds000
rowSums2000
rowTabulates000
rowVarDiffs000
rowVars000
rowWeightedMads000
rowWeightedMeans000
rowWeightedMedians000
rowWeightedSds000
rowWeightedVars000

MatrixGenerics.Rcheck/examples_x64/MatrixGenerics-Ex.timings

nameusersystemelapsed
rowAlls000
rowAnyNAs000
rowAnys000
rowAvgsPerColSet000
rowCollapse000
rowCounts000
rowCummaxs000
rowCummins000
rowCumprods000
rowCumsums000
rowDiffs000
rowIQRDiffs0.010.000.02
rowIQRs000
rowLogSumExps000
rowMadDiffs000
rowMads000
rowMaxs000
rowMeans2000
rowMedians000
rowMins000
rowOrderStats0.000.010.11
rowProds000
rowQuantiles0.010.000.02
rowRanges000
rowRanks000
rowSdDiffs000
rowSds000
rowSums2000
rowTabulates0.000.020.01
rowVarDiffs000
rowVars000
rowWeightedMads0.000.000.02
rowWeightedMeans0.000.000.09
rowWeightedMedians000
rowWeightedSds000
rowWeightedVars000