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INSTALL report for HiTC on tokay2

This page was generated on 2020-10-17 11:56:49 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE HiTC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 827/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiTC 1.32.0
Nicolas Servant
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/HiTC
Branch: RELEASE_3_11
Last Commit: 763e1c7
Last Changed Date: 2020-04-27 14:29:28 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: HiTC
Version: 1.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HiTC_1.32.0.tar.gz && rm -rf HiTC.buildbin-libdir && mkdir HiTC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiTC.buildbin-libdir HiTC_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HiTC_1.32.0.zip && rm HiTC_1.32.0.tar.gz HiTC_1.32.0.zip
StartedAt: 2020-10-16 18:41:01 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:42:08 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 67.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HiTC_1.32.0.tar.gz && rm -rf HiTC.buildbin-libdir && mkdir HiTC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiTC.buildbin-libdir HiTC_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HiTC_1.32.0.zip && rm HiTC_1.32.0.tar.gz HiTC_1.32.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  722k  100  722k    0     0  10.6M      0 --:--:-- --:--:-- --:--:-- 11.7M

install for i386

* installing *source* package 'HiTC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiTC'
    finding HTML links ... done
    CQC                                     html  
    HTCexp-class                            html  
    HTClist-class                           html  
    HiTC-internal                           html  
    Nora_5C                                 html  
    binningC                                html  
    directionalityIndex                     html  
    discretize                              html  
    export.my5C                             html  
    exportC                                 html  
    extractRegion                           html  
    getAnnotatedRestrictionSites            html  
    getExpectedCounts                       html  
    getPearsonMap                           html  
    getRestrictionFragmentsPerChromosome    html  
    import.my5C                             html  
    importC                                 html  
    intervalsDist                           html  
    mapC                                    html  
    normICE                                 html  
    normLGF                                 html  
    pca.hic                                 html  
    removeIntervals                         html  
    setGenomicFeatures                      html  
    setIntervalScale                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiTC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiTC' as HiTC_1.32.0.zip
* DONE (HiTC)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'HiTC' successfully unpacked and MD5 sums checked