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INSTALL report for CoreGx on tokay2

This page was generated on 2020-10-17 11:56:22 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CoreGx PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 376/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoreGx 1.0.2
Benjamin Haibe-Kains
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/CoreGx
Branch: RELEASE_3_11
Last Commit: b528829
Last Changed Date: 2020-06-09 17:03:07 -0400 (Tue, 09 Jun 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CoreGx
Version: 1.0.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CoreGx_1.0.2.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.0.2.zip && rm CoreGx_1.0.2.tar.gz CoreGx_1.0.2.zip
StartedAt: 2020-10-16 18:24:06 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:25:23 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 76.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CoreGx_1.0.2.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.0.2.zip && rm CoreGx_1.0.2.tar.gz CoreGx_1.0.2.zip
###
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100  219k  100  219k    0     0  2316k      0 --:--:-- --:--:-- --:--:-- 2490k

install for i386

* installing *source* package 'CoreGx' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CoreGx'
    finding HTML links ... done
    CoreSet-class                           html  
    CoreSet                                 html  
    amcc                                    html  
    callingWaterfall                        html  
    cellInfo-set                            html  
    cellInfo                                html  
    cellNames-set                           html  
    cellNames                               html  
    checkCsetStructure                      html  
    clevelandSmall_cSet                     html  
    connectivityScore                       html  
    cosinePerm                              html  
    dateCreated                             html  
    dot-convertCSetMolecularProfilesToSE    html  
    dot-distancePointLine                   html  
    dot-distancePointSegment                html  
    dot-examineGOF                          html  
    dot-getSupportVec                       html  
    dot-intersectList                       html  
    dot-meshEval                            html  
    dot-residual                            html  
    dot-symSetDiffList                      html  
    dot-unionList                           html  
    fNames-set                              html  
    fNames                                  html  
    featureInfo-set                         html  
    featureInfo                             html  
    gwc                                     html  
    mDataNames-CoreSet-method               html  
    mDataNames                              html  
    mcc                                     html  
    molecularProfiles-set                   html  
    molecularProfiles                       html  
    molecularProfilesSlot-set               html  
    molecularProfilesSlot                   html  
    name                                    html  
    pertNumber-set                          html  
    pertNumber                              html  
    phenoInfo-set                           html  
    phenoInfo                               html  
    sensNumber-set                          html  
    sensNumber                              html  
    sensitivityInfo-set                     html  
    sensitivityInfo                         html  
    sensitivityMeasures                     html  
    sensitivityProfiles-set                 html  
    sensitivityProfiles                     html  
    show-CoreSet-method                     html  
    updateCellId                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CoreGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CoreGx' as CoreGx_1.0.2.zip
* DONE (CoreGx)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CoreGx' successfully unpacked and MD5 sums checked