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INSTALL report for CNVRanger on tokay2

This page was generated on 2020-10-17 11:56:21 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CNVRanger PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 338/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVRanger 1.4.3
Ludwig Geistlinger
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/CNVRanger
Branch: RELEASE_3_11
Last Commit: 2b6d559
Last Changed Date: 2020-06-05 12:12:56 -0400 (Fri, 05 Jun 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNVRanger
Version: 1.4.3
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CNVRanger_1.4.3.tar.gz && rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVRanger.buildbin-libdir CNVRanger_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CNVRanger_1.4.3.zip && rm CNVRanger_1.4.3.tar.gz CNVRanger_1.4.3.zip
StartedAt: 2020-10-16 19:01:35 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:02:43 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 68.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CNVRanger_1.4.3.tar.gz && rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVRanger.buildbin-libdir CNVRanger_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CNVRanger_1.4.3.zip && rm CNVRanger_1.4.3.tar.gz CNVRanger_1.4.3.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  895k  100  895k    0     0  6893k      0 --:--:-- --:--:-- --:--:-- 7283k

install for i386

* installing *source* package 'CNVRanger' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVRanger'
    finding HTML links ... done
    cnvEQTL                                 html  
    finding level-2 HTML links ... done

    cnvGWAS                                 html  
    cnvOncoPrint                            html  
    generateGDS                             html  
    importLrrBaf                            html  
    plotEQTL                                html  
    plotManhattan                           html  
    plotRecurrentRegions                    html  
    populationRanges                        html  
    setupCnvGWAS                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNVRanger' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVRanger' as CNVRanger_1.4.3.zip
* DONE (CNVRanger)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CNVRanger' successfully unpacked and MD5 sums checked