Yuliya V Karpievitch
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ProteoMM |
| Branch: RELEASE_3_10 |
| Last Commit: c91e53f |
| Last Changed Date: 2019-10-29 13:11:25 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:31:21 -0400 (Wed, 15 Apr 2020).
| Package 1321/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ProteoMM 1.4.0 Yuliya V Karpievitch
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ProteoMM |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProteoMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ProteoMM_1.4.0.tar.gz |
| StartedAt: 2020-04-15 05:43:13 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 05:47:34 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 261.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ProteoMM.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProteoMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ProteoMM_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/ProteoMM.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ProteoMM/DESCRIPTION' ... OK
* this is package 'ProteoMM' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ProteoMM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
prot_level_multi_part 31.64 0.02 31.67
subset_proteins 10.19 0.03 10.22
prot_level_multiMat_PresAbs 9.28 0.02 9.30
peptideLevel_PresAbsDE 8.61 0.02 8.62
peptideLevel_DE 6.72 0.00 6.71
MBimpute 6.09 0.05 6.14
get_presAbs_prots 5.22 0.03 5.25
eig_norm1 3.56 0.01 7.80
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
prot_level_multi_part 32.30 0.02 32.32
prot_level_multiMat_PresAbs 10.62 0.00 10.62
subset_proteins 7.67 0.01 7.68
get_presAbs_prots 7.50 0.00 7.50
MBimpute 6.70 0.03 6.73
peptideLevel_PresAbsDE 6.53 0.01 6.55
plot_volcano_wLab 6.08 0.00 6.08
plot_volcano 5.82 0.00 5.81
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/ProteoMM.Rcheck/00check.log'
for details.
ProteoMM.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ProteoMM_1.4.0.tar.gz && rm -rf ProteoMM.buildbin-libdir && mkdir ProteoMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProteoMM.buildbin-libdir ProteoMM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ProteoMM_1.4.0.zip && rm ProteoMM_1.4.0.tar.gz ProteoMM_1.4.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 110k 100 110k 0 0 2482k 0 --:--:-- --:--:-- --:--:-- 2684k
install for i386
* installing *source* package 'ProteoMM' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ProteoMM'
finding HTML links ... done
MBimpute html
convert_log2 html
eig_norm1 html
eig_norm2 html
eigen_pi html
g.test html
get_presAbs_prots html
hs_peptides html
makeLMFormula html
make_intencities html
make_meta html
mm_peptides html
peptideLevel_DE html
peptideLevel_PresAbsDE html
plot_1prot html
plot_3_pep_trends_NOfile html
plot_volcano html
plot_volcano_wLab html
prot_level_multiMat_PresAbs html
prot_level_multi_part html
subset_proteins html
sva.id html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ProteoMM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ProteoMM' as ProteoMM_1.4.0.zip
* DONE (ProteoMM)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ProteoMM' successfully unpacked and MD5 sums checked
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ProteoMM.Rcheck/examples_i386/ProteoMM-Ex.timings
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ProteoMM.Rcheck/examples_x64/ProteoMM-Ex.timings
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