Package: waddR

Version: 1.0.1

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL waddR

StartedAt: 2020-04-14 18:40:29 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 18:41:14 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 45.3 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL waddR
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘waddR’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp: In function ‘std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)’:
wasserstein.cpp:348:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
      for(int i=0; i<x.size(); i++) {
                   ~^~~~~~~~~
wasserstein.cpp: In function ‘std::vector<double> concat(std::vector<double>&, std::vector<double>&)’:
wasserstein.cpp:386:27: warning: variable ‘out_it_end’ set but not used [-Wunused-but-set-variable]
  vector<double>::iterator out_it_end = out.end();
                           ^~~~~~~~~~
wasserstein.cpp: In function ‘std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)’:
wasserstein.cpp:584:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    while (data_i < datavec.size()) {
           ~~~~~~~^~~~~~~~~~~~~~~~
wasserstein.cpp: In function ‘double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)’:
wasserstein.cpp:1094:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for (int i=0; i<x.size(); i++) { x[i] = x_[i];}
                ~^~~~~~~~~
wasserstein.cpp:1095:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for (int j=0; j<y.size(); j++) { y[j] = y_[j];}
                ~^~~~~~~~~
wasserstein.cpp: In instantiation of ‘double cor(const std::vector<T>&, const std::vector<T>&, double, double) [with T = double]’:
wasserstein.cpp:720:49:   required from here
wasserstein.cpp:439:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for (int i=0; i<x.size(); i++){
wasserstein.cpp: In instantiation of ‘std::vector<T> operator-(const std::vector<T>&, const std::vector<T>&) [with T = double]’:
wasserstein.cpp:782:44:   required from here
wasserstein.cpp:121:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> cumSum(const std::vector<T>&, int) [with T = double]’:
wasserstein.cpp:890:17:   required from here
wasserstein.cpp:472:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  int upper = ((last_index > 0) && (last_index <= x.size())
                                   ~~~~~~~~~~~~^~~~~~~~~~~~
wasserstein.cpp: In instantiation of ‘std::vector<T> operator*(const std::vector<T>&, const std::vector<T>&) [with T = double]’:
wasserstein.cpp:918:62:   required from here
wasserstein.cpp:101:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> operator+(std::vector<T>, std::vector<T>) [with T = double]’:
wasserstein.cpp:939:15:   required from here
wasserstein.cpp:53:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> operator/(const std::vector<T>&, const std::vector<T>&) [with T = double]’:
wasserstein.cpp:1052:15:   required from here
wasserstein.cpp:169:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> quantile(const std::vector<T>&, std::vector<double>, int) [with T = double]’:
wasserstein.cpp:1168:27:   required from here
wasserstein.cpp:501:4: warning: unused variable ‘max_x’ [-Wunused-variable]
  T max_x = x_sorted[n-1];
    ^~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o waddR.so RcppExports.o wasserstein.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-waddR/00new/waddR/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (waddR)