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INSTALL report for synapter on tokay1

This page was generated on 2020-04-15 12:20:47 -0400 (Wed, 15 Apr 2020).

Package 1698/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
synapter 2.10.0
Laurent Gatto
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/synapter
Branch: RELEASE_3_10
Last Commit: 7316aec
Last Changed Date: 2019-10-29 13:08:32 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: synapter
Version: 2.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/synapter_2.10.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL synapter_2.10.0.zip && rm synapter_2.10.0.tar.gz synapter_2.10.0.zip
StartedAt: 2020-04-14 20:12:53 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:14:09 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 76.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/synapter_2.10.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL synapter_2.10.0.zip && rm synapter_2.10.0.tar.gz synapter_2.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 1169k  100 1169k    0     0  7785k      0 --:--:-- --:--:-- --:--:-- 8009k

install for i386

* installing *source* package 'synapter' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'synapter'
    finding HTML links ... done
    MasterFdrResults-class                  html  
    MasterPeptides-class                    html  
    Synapter                                html  
    finding level-2 HTML links ... done

    createUniquePeptideDbRds                html  
    defunct                                 html  
    estimateMasterFdr                       html  
    inspectPeptideScores                    html  
    makeMaster                              html  
    plotCrossMatching                       html  
    requantify                              html  
    rescaleForTop3                          html  
    synapter-package                        html  
    synapterGuide                           html  
    synapterPlgsAgreement                   html  
    synapterTinyData                        html  
    synergise                               html  
    synergise2                              html  
** building package indices
** installing vignettes
   'fragmentmatching.Rmd' using 'UTF-8' 
   'synapter.Rmd' using 'UTF-8' 
   'synapter2.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'synapter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synapter' as synapter_2.10.0.zip
* DONE (synapter)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'synapter' successfully unpacked and MD5 sums checked