Kelly Street
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/slingshot |
| Branch: RELEASE_3_10 |
| Last Commit: 35e457a |
| Last Changed Date: 2019-10-29 13:11:12 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:30:37 -0400 (Wed, 15 Apr 2020).
| Package 1614/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| slingshot 1.4.0 Kelly Street
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: slingshot |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:slingshot.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings slingshot_1.4.0.tar.gz |
| StartedAt: 2020-04-15 06:43:49 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:48:14 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 264.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: slingshot.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:slingshot.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings slingshot_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/slingshot.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'slingshot/DESCRIPTION' ... OK * this is package 'slingshot' version '1.4.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'slingshot' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
slingshot.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/slingshot_1.4.0.tar.gz && rm -rf slingshot.buildbin-libdir && mkdir slingshot.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slingshot.buildbin-libdir slingshot_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL slingshot_1.4.0.zip && rm slingshot_1.4.0.tar.gz slingshot_1.4.0.zip
###
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install for i386
* installing *source* package 'slingshot' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'slingshot' with signature 'data="ClusterExperiment"': no definition for class "ClusterExperiment"
** help
*** installing help indices
converting help for package 'slingshot'
finding HTML links ... done
SlingshotDataSet-class html
SlingshotDataSet html
getCurves html
getLineages html
finding level-2 HTML links ... done
newSlingshotDataSet html
pairs-SlingshotDataSet html
plot-SlingshotDataSet html
plot3d-SlingshotDataSet html
plotGenePseudotime html
predict.SlingshotDataSet html
slingAdjacency html
slingClusterLabels html
slingCurves html
slingLineages html
slingParams html
slingPseudotime html
slingshot html
slingshotExample html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'slingshot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'slingshot' as slingshot_1.4.0.zip
* DONE (slingshot)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'slingshot' successfully unpacked and MD5 sums checked
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slingshot.Rcheck/tests_i386/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(slingshot)
Loading required package: princurve
>
> test_check("slingshot")
Error in library.dynam(dynlib, pkg, lib) :
DLL 'rgl' not found: maybe not installed for this architecture?
class: SlingshotDataSet
Samples Dimensions
140 2
lineages: 2
Lineage1: 1 2 3 5
Lineage2: 1 2 3 4
curves: 2
Curve1: Length: 15.045 Samples: 100.6
Curve2: Length: 15.126 Samples: 103.5
== testthat results ===========================================================
[ OK: 123 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
22.81 1.35 26.17
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slingshot.Rcheck/tests_x64/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(slingshot)
Loading required package: princurve
>
> test_check("slingshot")
class: SlingshotDataSet
Samples Dimensions
140 2
lineages: 2
Lineage1: 1 2 3 5
Lineage2: 1 2 3 4
curves: 2
Curve1: Length: 15.045 Samples: 100.6
Curve2: Length: 15.126 Samples: 103.5
== testthat results ===========================================================
[ OK: 123 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
24.17 0.70 24.92
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slingshot.Rcheck/examples_i386/slingshot-Ex.timings
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slingshot.Rcheck/examples_x64/slingshot-Ex.timings
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