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BUILD BIN report for sitePath on tokay1

This page was generated on 2020-04-15 12:32:11 -0400 (Wed, 15 Apr 2020).

Package 1609/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sitePath 1.2.3
Chengyang Ji
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/sitePath
Branch: RELEASE_3_10
Last Commit: 86e44d4
Last Changed Date: 2020-04-01 12:28:39 -0400 (Wed, 01 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sitePath
Version: 1.2.3
Command: rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitePath.buildbin-libdir sitePath_1.2.3.tar.gz
StartedAt: 2020-04-15 09:42:39 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:43:42 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 62.7 seconds
RetCode: 0
Status:  OK  
PackageFile: sitePath_1.2.3.zip
PackageFileSize: 1.19 MiB

Command output

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###
### Running command:
###
###   rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitePath.buildbin-libdir sitePath_1.2.3.tar.gz
###
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install for i386

* installing *source* package 'sitePath' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c exportFunc.cpp -o exportFunc.o
exportFunc.cpp: In function 'Rcpp::ListOf<Rcpp::Vector<13> > majorSNPtips(const CharacterVector&, int)':
exportFunc.cpp:54:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (unsigned int siteIndex = 0; siteIndex < alignedSeqs[0].size(); ++siteIndex) {
                                                ^
exportFunc.cpp: In function 'Rcpp::ListOf<Rcpp::Vector<13> > mergePaths(const Rcpp::ListOf<Rcpp::Vector<13> >&)':
exportFunc.cpp:85:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (unsigned int i = 1; i < paths.size(); ++i) {
                                ^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c minEntropy.cpp -o minEntropy.o
minEntropy.cpp: In function 'Rcpp::ListOf<Rcpp::Vector<13> > MinEntropy::updatedSegmentation(const Rcpp::ListOf<Rcpp::Vector<13> >&, const segment&)':
minEntropy.cpp:389:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (unsigned int j = 0; j < aa.size(); ++j) {
                                        ^
minEntropy.cpp: In instantiation of 'MinEntropy::SearchTree<T>::SearchTree(unsigned int, unsigned int, const Rcpp::ListOf<Rcpp::Vector<13> >&) [with T = MinEntropy::Segmentor]':
minEntropy.cpp:438:28:   required from here
minEntropy.cpp:177:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (unsigned int j = 0; j < aa.size(); ++j) {
                                    ^
minEntropy.cpp: In instantiation of 'MinEntropy::SearchTree<T>::SearchTree(unsigned int, unsigned int, const Rcpp::ListOf<Rcpp::Vector<13> >&) [with T = MinEntropy::Amalgamator]':
minEntropy.cpp:439:28:   required from here
minEntropy.cpp:177:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c treemer.cpp -o treemer.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c util.cpp -o util.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sitePath.dll tmp.def RcppExports.o exportFunc.o minEntropy.o treemer.o util.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/sitePath.buildbin-libdir/00LOCK-sitePath/00new/sitePath/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sitePath'
    finding HTML links ... done
    addMSA                                  html  
    extractTips                             html  
    findSites                               html  
    h3n2_align                              html  
    h3n2_align_reduced                      html  
    h3n2_tree                               html  
    h3n2_tree_reduced                       html  
    plot.lineagePath                        html  
    plot.sitePath                           html  
    plotSingleSite                          html  
    pre-assessment                          html  
    setSiteNumbering                        html  
    treemer                                 html  
    zikv_align                              html  
    zikv_align_reduced                      html  
    zikv_tree                               html  
    zikv_tree_reduced                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sitePath' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c exportFunc.cpp -o exportFunc.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c minEntropy.cpp -o minEntropy.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c treemer.cpp -o treemer.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c util.cpp -o util.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sitePath.dll tmp.def RcppExports.o exportFunc.o minEntropy.o treemer.o util.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/sitePath.buildbin-libdir/sitePath/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sitePath' as sitePath_1.2.3.zip
* DONE (sitePath)