Back to Multiple platform build/check report for BioC 3.10
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for simpleaffy on malbec1

This page was generated on 2020-04-15 12:04:06 -0400 (Wed, 15 Apr 2020).

Package 1601/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.62.0
Crispin Miller
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/simpleaffy
Branch: RELEASE_3_10
Last Commit: 6418a82
Last Changed Date: 2019-10-29 13:07:26 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: simpleaffy
Version: 2.62.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL simpleaffy
StartedAt: 2020-04-14 18:16:50 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:17:08 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 18.7 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL simpleaffy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘simpleaffy’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function ‘bgmas’:
simpleaffy.c:440:30: warning: passing argument 1 of ‘REprintf’ from incompatible pointer type [-Wincompatible-pointer-types]
     if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
                              ^~~~~~
In file included from /home/biocbuild/bbs-3.10-bioc/R/include/R.h:88:0,
                 from simpleaffy.c:5:
/home/biocbuild/bbs-3.10-bioc/R/include/R_ext/Print.h:43:6: note: expected ‘const char *’ but argument is of type ‘struct _IO_FILE *’
 void REprintf(const char *, ...);
      ^~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o simpleaffy.so simpleaffy.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-simpleaffy/00new/simpleaffy/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (simpleaffy)