Package: seqTools

Version: 1.20.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/seqTools_1.20.0.tar.gz && rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqTools.buildbin-libdir seqTools_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL seqTools_1.20.0.zip && rm seqTools_1.20.0.tar.gz seqTools_1.20.0.zip

StartedAt: 2020-04-14 19:08:29 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 19:09:16 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 46.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/seqTools_1.20.0.tar.gz && rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqTools.buildbin-libdir seqTools_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL seqTools_1.20.0.zip && rm seqTools_1.20.0.tar.gz seqTools_1.20.0.zip
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install for i386

* installing *source* package 'seqTools' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/zlibbioc/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c seqTools.c -o seqTools.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/seqTools.buildbin-libdir/00LOCK-seqTools/00new/seqTools/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqTools'
    finding HTML links ... done
    Fastqq-class                            html  
    ascii2char                              html  
    cbDistMatrix                            html  
    collectDur                              html  
    countDnaKmers                           html  
    countFastaKmers                         html  
    countGenomeKmers                        html  
    countSpliceKmers                        html  
    fastqKmerLocs                           html  
    fastqKmerSubsetLocs                     html  
    fastqq                                  html  
    gcContentMatrix                         html  
    kMerIndex                               html  
    meltDownK                               html  
    mergeFastqq                             html  
    mergedPhred                             html  
    phredDist                               html  
    phredTable                              html  
    plotGCcontent                           html  
    plotKmerCount                           html  
    plotNucCount                            html  
    plotNucFreq                             html  
    plotPhredQuant                          html  
    propPhred                               html  
    revCountDnaKmers                        html  
    seqTools-package                        html  
    simFastqqRunTimes                       html  
    sim_fq                                  html  
    trimFastq                               html  
    writeFai                                html  
    writeSimContFastq                       html  
    writeSimFastq                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqTools' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/zlibbioc/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c seqTools.c -o seqTools.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/seqTools.buildbin-libdir/seqTools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqTools' as seqTools_1.20.0.zip
* DONE (seqTools)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'seqTools' successfully unpacked and MD5 sums checked