rama 1.60.0
Raphael Gottardo
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/rama |
| Branch: RELEASE_3_10 |
| Last Commit: 6e78e64 |
| Last Changed Date: 2019-10-29 13:07:27 -0400 (Tue, 29 Oct 2019) |
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | WARNINGS | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL rama
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘rama’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function ‘mcmc_shift’:
estimation_slice.c:122:10: warning: unused variable ‘SSeps_sd_new’ [-Wunused-variable]
double SSeps_sd_new=0.;
^~~~~~~~~~~~
estimation_slice.c:121:10: warning: unused variable ‘SSeps_sd’ [-Wunused-variable]
double SSeps_sd=0.;
^~~~~~~~
estimation_slice.c:117:10: warning: unused variable ‘pi’ [-Wunused-variable]
double pi=3.14;
^~
estimation_slice.c:116:24: warning: unused variable ‘SS12’ [-Wunused-variable]
double SSR1=0,SSR2=0,SS12=0;
^~~~
estimation_slice.c:116:17: warning: unused variable ‘SSR2’ [-Wunused-variable]
double SSR1=0,SSR2=0,SS12=0;
^~~~
estimation_slice.c:116:10: warning: unused variable ‘SSR1’ [-Wunused-variable]
double SSR1=0,SSR2=0,SS12=0;
^~~~
estimation_slice.c:115:25: warning: unused variable ‘dens_epsilon_new’ [-Wunused-variable]
double dens_epsilon=0,dens_epsilon_new=0;
^~~~~~~~~~~~~~~~
estimation_slice.c:115:10: warning: unused variable ‘dens_epsilon’ [-Wunused-variable]
double dens_epsilon=0,dens_epsilon_new=0;
^~~~~~~~~~~~
estimation_slice.c:114:22: warning: unused variable ‘l_epsilon_new’ [-Wunused-variable]
double l_epsilon=0,l_epsilon_new=0;
^~~~~~~~~~~~~
estimation_slice.c:114:10: warning: unused variable ‘l_epsilon’ [-Wunused-variable]
double l_epsilon=0,l_epsilon_new=0;
^~~~~~~~~
estimation_slice.c:113:27: warning: unused variable ‘lambda_eps2_new’ [-Wunused-variable]
double lambda_eps1_new, lambda_eps2_new;
^~~~~~~~~~~~~~~
estimation_slice.c:113:10: warning: unused variable ‘lambda_eps1_new’ [-Wunused-variable]
double lambda_eps1_new, lambda_eps2_new;
^~~~~~~~~~~~~~~
estimation_slice.c: In function ‘slice_sampling_lambda_eps’:
estimation_slice.c:484:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(J>0 & z<log_f_L)
~^~
estimation_slice.c:493:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & z<log_f_R)
~^~
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function ‘mcmc’:
ex_estimation_slice.c:144:10: warning: unused variable ‘old_a’ [-Wunused-variable]
double old_a=0,width_a=1.;
^~~~~
ex_estimation_slice.c:143:10: warning: unused variable ‘old_b’ [-Wunused-variable]
double old_b=0,width_b=5.;
^~~~~
ex_estimation_slice.c:138:10: warning: unused variable ‘sum_res2’ [-Wunused-variable]
double sum_res2;
^~~~~~~~
ex_estimation_slice.c:137:10: warning: unused variable ‘sum_res1’ [-Wunused-variable]
double sum_res1;
^~~~~~~~
ex_estimation_slice.c:119:19: warning: unused variable ‘dens_t_new’ [-Wunused-variable]
double dens_t=0,dens_t_new=0;
^~~~~~~~~~
ex_estimation_slice.c:119:10: warning: unused variable ‘dens_t’ [-Wunused-variable]
double dens_t=0,dens_t_new=0;
^~~~~~
ex_estimation_slice.c:112:10: warning: unused variable ‘pi’ [-Wunused-variable]
double pi=3.14;
^~
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c mean.sd.c -o mean.sd.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c reorder.c -o reorder.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c util.c -o util.o
util.c: In function ‘product_mat_vec’:
util.c:574:11: warning: unused variable ‘k’ [-Wunused-variable]
int i,j,k;
^
util.c: In function ‘slice_sampling_a’:
util.c:629:17: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~~~~~~~
util.c:629:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~
util.c:636:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_L & mL<L)
~^~~~~~~~
util.c:643:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_R & mR>R)
~^~~~~~~~
util.c:613:13: warning: unused variable ‘v’ [-Wunused-variable]
double u, v, L, R, z, a1;
^
util.c: In function ‘slice_sampling_b’:
util.c:703:17: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~~~~~~~
util.c:703:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~
util.c:710:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_L & mL<L)
~^~~~~~~~
util.c:717:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_R & mR>R)
~^~~~~~~~
util.c:686:13: warning: unused variable ‘v’ [-Wunused-variable]
double u, v, L, R, z, b1;
^
util.c: In function ‘slice_sampling_b2’:
util.c:767:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(J>0 & z<log_f_L)
~^~
util.c:775:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & z<log_f_R)
~^~
util.c: In function ‘slice_sampling_a2’:
util.c:822:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(J>0 & z<log_f_L)
~^~
util.c:830:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & z<log_f_R)
~^~
util.c: In function ‘slice_sampling_rho’:
util.c:876:17: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~~~~~~~
util.c:876:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~
util.c:883:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_L & mL<L)
~^~~~~~~~
util.c:890:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_R & mR>R)
~^~~~~~~~
util.c:860:13: warning: unused variable ‘v’ [-Wunused-variable]
double u, v, L, R, z, rho_new;
^
util.c: In function ‘slice_sampling_rho2’:
util.c:935:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(J>0 & z<log_f_L)
~^~
util.c:944:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & z<log_f_R)
~^~
util.c: In function ‘slice_sampling_shift’:
util.c:1019:17: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~~~~~~~
util.c:1019:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & (z<log_f_L | z<log_f_R))
~^~
util.c:1026:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_L & mL<L)
~^~~~~~~~
util.c:1033:8: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(z>log_f_R & mR>R)
~^~~~~~~~
util.c:1000:13: warning: unused variable ‘v’ [-Wunused-variable]
double u, v, L, R, z, shift_new;
^
util.c: In function ‘slice_sampling_shift2’:
util.c:1100:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(J>0 & z<log_f_L)
~^~
util.c:1108:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & z<log_f_R)
~^~
util.c:1082:13: warning: unused variable ‘v’ [-Wunused-variable]
double u, v, L, R, z, shift_new;
^
util.c: In function ‘slice_sampling_p’:
util.c:1248:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(J>0 & z<log_f_L)
~^~
util.c:1256:10: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
while(K>0 & z<log_f_R)
~^~
gcc -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o rama.so estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-rama/00new/rama/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rama)