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BUILD BIN report for qrqc on tokay1

This page was generated on 2020-04-15 12:19:51 -0400 (Wed, 15 Apr 2020).

Package 1343/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qrqc 1.40.0
Vince Buffalo
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/qrqc
Branch: RELEASE_3_10
Last Commit: a7fa1d3
Last Changed Date: 2019-10-29 13:08:20 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: qrqc
Version: 1.40.0
Command: rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qrqc.buildbin-libdir qrqc_1.40.0.tar.gz
StartedAt: 2020-04-15 09:27:41 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:28:48 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 66.4 seconds
RetCode: 0
Status:  OK  
PackageFile: qrqc_1.40.0.zip
PackageFileSize: 862.9 KiB

Command output

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### Running command:
###
###   rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qrqc.buildbin-libdir qrqc_1.40.0.tar.gz
###
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install for i386

* installing *source* package 'qrqc' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_io.c -o R_init_io.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c io.c -o io.o
In file included from io.c:12:0:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:176:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
  SCOPE void kseq_destroy(kseq_t *ks)         \
             ^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:241:2: note: in expansion of macro '__KSEQ_BASIC'
  __KSEQ_BASIC(SCOPE, type_t)     \
  ^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:244:35: note: in expansion of macro 'KSEQ_INIT2'
 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
                                   ^
io.c:29:1: note: in expansion of macro 'KSEQ_INIT'
 KSEQ_INIT(FILE_TYPE*, gzreadclone)
 ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/usrlib/i386/libhts.a -LC:/extsoft/lib/i386 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -lidn -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/qrqc.buildbin-libdir/00LOCK-qrqc/00new/qrqc/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'qrqc'
    finding HTML links ... done
    FASTASummary-class                      html  
    FASTQSummary-class                      html  
    SequenceSummary-class                   html  
    basePlot-methods                        html  
    calcKL                                  html  
    gcPlot-methods                          html  
    geom_qlinerange                         html  
    getBase-methods                         html  
    getBaseProp-methods                     html  
    getGC-methods                           html  
    getKmer-methods                         html  
    getMCQual-methods                       html  
    getQual-methods                         html  
    getSeqlen-methods                       html  
    kmerEntropyPlot                         html  
    kmerKLPlot                              html  
    list2df                                 html  
    makeReport                              html  
    plotBases                               html  
    plotGC                                  html  
    plotQuals                               html  
    plotSeqLengths                          html  
    qualPlot-methods                        html  
    readSeqFile                             html  
    scale_color_dna                         html  
    scale_color_iupac                       html  
    seqlenPlot-methods                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'qrqc' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_io.c -o R_init_io.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c io.c -o io.o
In file included from io.c:12:0:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:176:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
  SCOPE void kseq_destroy(kseq_t *ks)         \
             ^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:241:2: note: in expansion of macro '__KSEQ_BASIC'
  __KSEQ_BASIC(SCOPE, type_t)     \
  ^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:244:35: note: in expansion of macro 'KSEQ_INIT2'
 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
                                   ^
io.c:29:1: note: in expansion of macro 'KSEQ_INIT'
 KSEQ_INIT(FILE_TYPE*, gzreadclone)
 ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qrqc' as qrqc_1.40.0.zip
* DONE (qrqc)