Alba Gutierrez-Sacristan
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/psygenet2r |
| Branch: RELEASE_3_10 |
| Last Commit: f1f26c7 |
| Last Changed Date: 2019-10-29 13:09:35 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:26:17 -0400 (Wed, 15 Apr 2020).
| Package 1327/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| psygenet2r 1.18.0 Alba Gutierrez-Sacristan
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: psygenet2r |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/psygenet2r_1.18.0.tar.gz && rm -rf psygenet2r.buildbin-libdir && mkdir psygenet2r.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=psygenet2r.buildbin-libdir psygenet2r_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL psygenet2r_1.18.0.zip && rm psygenet2r_1.18.0.tar.gz psygenet2r_1.18.0.zip |
| StartedAt: 2020-04-14 19:23:09 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:23:42 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 33.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/psygenet2r_1.18.0.tar.gz && rm -rf psygenet2r.buildbin-libdir && mkdir psygenet2r.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=psygenet2r.buildbin-libdir psygenet2r_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL psygenet2r_1.18.0.zip && rm psygenet2r_1.18.0.tar.gz psygenet2r_1.18.0.zip
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install for i386
* installing *source* package 'psygenet2r' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL")
Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL")
Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL")
Note: possible error in 'psygenetGene(x, databse = "ALL", ': unused argument (databse = "ALL")
** help
*** installing help indices
converting help for package 'psygenet2r'
finding HTML links ... done
DataGeNET.Psy-class html
JaccardIndexPsy-class html
enrichedPD-methods html
extract html
extractSentences html
geneAttrPlot-methods html
getUMLs-methods html
jaccardEstimation-methods html
ndisease html
ngene html
pantherGraphic-methods html
plot-DataGeNET.Psy-ANY-method html
plot-JaccardIndexPsy-ANY-method html
psygenet2r html
psygenetDisease-methods html
psygenetDiseaseSentences html
psygenetGene-methods html
psygenetGeneSentences html
qr html
topAnatEnrichment-methods html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpk99eJz/R.INSTALL17b4160d551a/psygenet2r/man/topAnatEnrichment-methods.Rd:21: file link 'runTest' in package 'topGO' does not exist and so has been treated as a topic
universe html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'psygenet2r' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'psygenet2r' as psygenet2r_1.18.0.zip
* DONE (psygenet2r)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'psygenet2r' successfully unpacked and MD5 sums checked