Back to Multiple platform build/check report for BioC 3.10
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for pdInfoBuilder on malbec1

This page was generated on 2020-04-15 12:04:53 -0400 (Wed, 15 Apr 2020).

Package 1242/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pdInfoBuilder 1.50.0
Benilton Carvalho
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/pdInfoBuilder
Branch: RELEASE_3_10
Last Commit: 896b3de
Last Changed Date: 2019-10-29 13:07:46 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pdInfoBuilder
Version: 1.50.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL pdInfoBuilder
StartedAt: 2020-04-14 18:35:40 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:36:09 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 29.0 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL pdInfoBuilder
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘pdInfoBuilder’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c pdInfoBuilder.c -o pdInfoBuilder.o
gcc -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o pdInfoBuilder.so pdInfoBuilder.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-pdInfoBuilder/00new/pdInfoBuilder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘BuildingPDInfoPkgs.Rnw’ 
   ‘howto-AffymetrixMapping.Rnw’ 
** testing if installed package can be loaded from temporary location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
** testing if installed package keeps a record of temporary installation path
* DONE (pdInfoBuilder)