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INSTALL report for nuCpos on tokay1

This page was generated on 2020-04-15 12:30:57 -0400 (Wed, 15 Apr 2020).

Package 1165/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nuCpos 1.4.0
Hiroaki Kato
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/nuCpos
Branch: RELEASE_3_10
Last Commit: c8f56d7
Last Changed Date: 2019-10-29 13:11:19 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: nuCpos
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/nuCpos_1.4.0.tar.gz && rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nuCpos.buildbin-libdir nuCpos_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL nuCpos_1.4.0.zip && rm nuCpos_1.4.0.tar.gz nuCpos_1.4.0.zip
StartedAt: 2020-04-14 18:32:45 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:33:26 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 41.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/nuCpos_1.4.0.tar.gz && rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nuCpos.buildbin-libdir nuCpos_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL nuCpos_1.4.0.zip && rm nuCpos_1.4.0.tar.gz nuCpos_1.4.0.zip
###
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install for i386

* installing *source* package 'nuCpos' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c  HBA_3.f90 -o HBA_3.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_nuCpos.c -o R_init_nuCpos.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c  localHBA_3.f90 -o localHBA_3.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c  nuCpos2_1.f90 -o nuCpos2_1.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c  nuCpos2_2.f90 -o nuCpos2_2.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c  nuCpos_1.f90 -o nuCpos_1.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c  nuCpos_2.f90 -o nuCpos_2.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o nuCpos.dll tmp.def HBA_3.o R_init_nuCpos.o localHBA_3.o nuCpos2_1.o nuCpos2_2.o nuCpos_1.o nuCpos_2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/nuCpos.buildbin-libdir/00LOCK-nuCpos/00new/nuCpos/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nuCpos'
    finding HTML links ... done
    HBA                                     html  
    localHBA                                html  
    mutNuCpos                               html  
    nuCpos-package                          html  
    predNuCpos                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'nuCpos' ...
** libs
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c  HBA_3.f90 -o HBA_3.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_nuCpos.c -o R_init_nuCpos.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c  localHBA_3.f90 -o localHBA_3.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c  nuCpos2_1.f90 -o nuCpos2_1.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c  nuCpos2_2.f90 -o nuCpos2_2.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c  nuCpos_1.f90 -o nuCpos_1.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c  nuCpos_2.f90 -o nuCpos_2.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o nuCpos.dll tmp.def HBA_3.o R_init_nuCpos.o localHBA_3.o nuCpos2_1.o nuCpos2_2.o nuCpos_1.o nuCpos_2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/nuCpos.buildbin-libdir/nuCpos/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nuCpos' as nuCpos_1.4.0.zip
* DONE (nuCpos)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'nuCpos' successfully unpacked and MD5 sums checked