Mike Jiang
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ncdfFlow |
| Branch: RELEASE_3_10 |
| Last Commit: 1c01749 |
| Last Changed Date: 2019-10-29 13:08:24 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:20:20 -0400 (Wed, 15 Apr 2020).
| Package 1136/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ncdfFlow 2.32.0 Mike Jiang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: ncdfFlow |
| Version: 2.32.0 |
| Command: rm -rf ncdfFlow.buildbin-libdir && mkdir ncdfFlow.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ncdfFlow.buildbin-libdir ncdfFlow_2.32.0.tar.gz |
| StartedAt: 2020-04-15 09:15:41 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 09:17:17 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 95.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: ncdfFlow_2.32.0.zip |
| PackageFileSize: 3.944 MiB |
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### Running command:
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### rm -rf ncdfFlow.buildbin-libdir && mkdir ncdfFlow.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ncdfFlow.buildbin-libdir ncdfFlow_2.32.0.tar.gz
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install for i386
* installing *source* package 'ncdfFlow' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c bitOps.cpp -o bitOps.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c hdfFlow.cpp -o hdfFlow.o
hdfFlow.cpp: In function 'void readSlice_cpp(hid_t, hid_t, hid_t, std::vector<unsigned int>, unsigned int, unsigned int, double*, bool)':
hdfFlow.cpp:486:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
herr_t status;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c readFrame.cpp -o readFrame.o
readFrame.cpp: In function 'Rcpp::S4 readFrame(Rcpp::S4, Rcpp::RObject, Rcpp::RObject, bool)':
readFrame.cpp:98:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned i = 0; i < j_val.size(); i++){
^
mkdir -p "C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/i386"
C:/Rtools/mingw_32/bin/ar rs "C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/i386/libncdfFlow.a" RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o
C:\Rtools\mingw_32\bin\ar.exe: creating C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/i386/libncdfFlow.a
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ncdfFlow.dll tmp.def RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/library/Rhdf5lib/lib/i386 -lhdf5 -lszip -lz -lpsapi -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ncdfFlow'
finding HTML links ... done
Indices html
as.flowSet html
clone.ncdfFlowSet html
extractFlowFrame html
finding level-2 HTML links ... done
flowSet-accessor html
getFileName html
lapply-methods html
ncdfFlow html
ncdfFlowList-class html
ncdfFlowSet-Subset html
ncdfFlowSet-class html
ncdfFlowSet-constructor html
ncdfFlowSet-split html
ncfsApply-ncdfFlowSet-method html
rbind2-method html
read.ncdfFlowSet html
replacement-method-for-ncdfFlowSet html
save_ncfs html
subset-functions html
subset-methods html
unlink-ncdfFlowSet-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ncdfFlow' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c bitOps.cpp -o bitOps.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c hdfFlow.cpp -o hdfFlow.o
hdfFlow.cpp: In function 'void readSlice_cpp(hid_t, hid_t, hid_t, std::vector<unsigned int>, unsigned int, unsigned int, double*, bool)':
hdfFlow.cpp:486:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
herr_t status;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c readFrame.cpp -o readFrame.o
mkdir -p "C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/ncdfFlow/lib/x64"
C:/Rtools/mingw_64/bin/ar rs "C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/ncdfFlow/lib/x64/libncdfFlow.a" RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o
C:\Rtools\mingw_64\bin\ar.exe: creating C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/ncdfFlow/lib/x64/libncdfFlow.a
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ncdfFlow.dll tmp.def RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/library/Rhdf5lib/lib/x64 -lhdf5 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ncdfFlow.buildbin-libdir/ncdfFlow/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ncdfFlow' as ncdfFlow_2.32.0.zip
* DONE (ncdfFlow)