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INSTALL report for multtest on tokay1

This page was generated on 2020-04-15 12:16:36 -0400 (Wed, 15 Apr 2020).

Package 1119/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
multtest 2.42.0
Katherine S. Pollard
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/multtest
Branch: RELEASE_3_10
Last Commit: 048f6b6
Last Changed Date: 2019-10-29 13:07:20 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: multtest
Version: 2.42.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/multtest_2.42.0.tar.gz && rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multtest.buildbin-libdir multtest_2.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL multtest_2.42.0.zip && rm multtest_2.42.0.tar.gz multtest_2.42.0.zip
StartedAt: 2020-04-14 18:48:28 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:49:04 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 36.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/multtest_2.42.0.tar.gz && rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multtest.buildbin-libdir multtest_2.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL multtest_2.42.0.zip && rm multtest_2.42.0.tar.gz multtest_2.42.0.zip
###
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100 1269k  100 1269k    0     0  25.9M      0 --:--:-- --:--:-- --:--:-- 28.1M

install for i386

* installing *source* package 'multtest' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c Rpack.c -o Rpack.o
Rpack.c: In function 'get_samples_T':
Rpack.c:139:17: warning: 'sd.test' may be used uninitialized in this function [-Wmaybe-uninitialized]
   SAMPLING_DATA sd;
                 ^
Rpack.c:143:3: warning: 'sd.fn_maxT' may be used uninitialized in this function [-Wmaybe-uninitialized]
   get_all_samples_T(V,n,T,*pna,sd.fn_maxT,sd.fn_first,sd.fn_next,(void*)extra);
   ^
Rpack.c: In function 'get_samples_P':
Rpack.c:150:17: warning: 'sd.test' may be used uninitialized in this function [-Wmaybe-uninitialized]
   SAMPLING_DATA sd;
                 ^
Rpack.c:154:3: warning: 'sd.fn_minP' may be used uninitialized in this function [-Wmaybe-uninitialized]
   get_all_samples_P(V,n,P,*pna,sd.fn_minP,sd.fn_first,sd.fn_next,sd.fn_cmp,(void*)extra);
   ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c VScount.c -o VScount.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c block_sampling_fixed.c -o block_sampling_fixed.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c bootloop.c -o bootloop.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c mt.c -o mt.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c pairt_sampling.c -o pairt_sampling.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c random.c -o random.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c sampling.c -o sampling.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c sampling_fixed.c -o sampling_fixed.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c stat_func.c -o stat_func.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c stat_order.c -o stat_order.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o multtest.dll tmp.def Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/multtest.buildbin-libdir/00LOCK-multtest/00new/multtest/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'multtest'
    finding HTML links ... done
    EBMTP-class                             html  
    EBMTP                                   html  
    Hsets                                   html  
    MTP-class                               html  
    MTP-methods                             html  
    MTP                                     html  
    boot.null                               html  
    corr.null                               html  
    fwer2gfwer                              html  
    get.index                               html  
    golub                                   html  
    meanX                                   html  
    mt.internal                             html  
    mt.maxT                                 html  
    mt.plot                                 html  
    mt.rawp2adjp                            html  
    mt.reject                               html  
    mt.sample.teststat                      html  
    mt.teststat                             html  
    ss.maxT                                 html  
    wapply                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'multtest' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c Rpack.c -o Rpack.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c VScount.c -o VScount.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c block_sampling_fixed.c -o block_sampling_fixed.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c bootloop.c -o bootloop.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c mt.c -o mt.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c pairt_sampling.c -o pairt_sampling.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c random.c -o random.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c sampling.c -o sampling.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c sampling_fixed.c -o sampling_fixed.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c stat_func.c -o stat_func.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c stat_order.c -o stat_order.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o multtest.dll tmp.def Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/multtest.buildbin-libdir/multtest/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'multtest' as multtest_2.42.0.zip
* DONE (multtest)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'multtest' successfully unpacked and MD5 sums checked