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INSTALL report for msPurity on tokay1

This page was generated on 2020-04-15 12:26:44 -0400 (Wed, 15 Apr 2020).

Package 1103/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msPurity 1.12.2
Thomas N. Lawson
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/msPurity
Branch: RELEASE_3_10
Last Commit: 2c0f0f1
Last Changed Date: 2020-03-26 13:49:40 -0400 (Thu, 26 Mar 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: msPurity
Version: 1.12.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/msPurity_1.12.2.tar.gz && rm -rf msPurity.buildbin-libdir && mkdir msPurity.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msPurity.buildbin-libdir msPurity_1.12.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL msPurity_1.12.2.zip && rm msPurity_1.12.2.tar.gz msPurity_1.12.2.zip
StartedAt: 2020-04-14 19:34:58 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:35:59 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 61.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/msPurity_1.12.2.tar.gz && rm -rf msPurity.buildbin-libdir && mkdir msPurity.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msPurity.buildbin-libdir msPurity_1.12.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL msPurity_1.12.2.zip && rm msPurity_1.12.2.tar.gz msPurity_1.12.2.zip
###
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100 7190k  100 7190k    0     0  57.6M      0 --:--:-- --:--:-- --:--:-- 59.5M

install for i386

* installing *source* package 'msPurity' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'msPurity'
    finding HTML links ... done
    Getfiles                                html  
    assessPuritySingle                      html  
    averageAllFragSpectra-purityA-method    html  
    averageInterFragSpectra-purityA-method
                                            html  
    averageIntraFragSpectra-purityA-method
                                            html  
    averageSpectra-purityD-method           html  
    averageSpectraSingle                    html  
    combineAnnotations                      html  
    createDatabase                          html  
    createMSP-purityA-method                html  
    create_database                         html  
    dimsPredictPurity-purityD-method        html  
    dimsPredictPuritySingle                 html  
    filterFragSpectra-purityA-method        html  
    filterp-purityD-method                  html  
    flag_remove                             html  
    frag4feature-purityA-method             html  
    getP-purityD-method                     html  
    get_additional_mzml_meta                html  
    groupPeaks-purityD-method               html  
    groupPeaksEx                            html  
    initialize-purityD-method               html  
    iwNormGauss                             html  
    iwNormQE.5                              html  
    iwNormRcosine                           html  
    msPurity                                html  
    pcalc                                   html  
    purityA                                 html  
    purityD-class                           html  
    purityX                                 html  
    show-purityA-method                     html  
    show-purityD-method                     html  
    show-purityX-method                     html  
    spectralMatching                        html  
    spectral_matching                       html  
    subtract-purityD-method                 html  
    subtractMZ                              html  
    validate-purityA-method                 html  
    writeOut-purityD-method                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'msPurity' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'msPurity' as msPurity_1.12.2.zip
* DONE (msPurity)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'msPurity' successfully unpacked and MD5 sums checked