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INSTALL report for methylumi on tokay1

This page was generated on 2020-04-15 12:18:51 -0400 (Wed, 15 Apr 2020).

Package 1029/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylumi 2.32.0
Sean Davis
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/methylumi
Branch: RELEASE_3_10
Last Commit: e2a29c1
Last Changed Date: 2019-10-29 13:08:05 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: methylumi
Version: 2.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/methylumi_2.32.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL methylumi_2.32.0.zip && rm methylumi_2.32.0.tar.gz methylumi_2.32.0.zip
StartedAt: 2020-04-14 20:34:14 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:35:39 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 85.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/methylumi_2.32.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL methylumi_2.32.0.zip && rm methylumi_2.32.0.tar.gz methylumi_2.32.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 5611k  100 5611k    0     0  35.9M      0 --:--:-- --:--:-- --:--:-- 36.7M

install for i386

* installing *source* package 'methylumi' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'methylumi'
    finding HTML links ... done
    CpGs                                    html  
    MethyLumi-class                         html  
    finding level-2 HTML links ... done

    MethyLumiM-class                        html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:41: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:41: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:53: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:54: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:55: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:56: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:57: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:58: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpkbt2Ef/R.INSTALL14a44d72487f/methylumi/man/MethyLumiM-class.Rd:70: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    MethyLumiQC-class                       html  
    MethyLumiSet-class                      html  
    estimateM                               html  
    extractBarcodeAndPosition               html  
    featureFilter                           html  
    generics                                html  
    getAssayDataNameSubstitutions           html  
    methylData-class                        html  
    methylumIDAT                            html  
    methylumi-package                       html  
    methylumiGenerics                       html  
    methylumiR                              html  
    mldat                                   html  
    normalizeMethyLumiSet                   html  
    plotSampleIntensities                   html  
    qcplot                                  html  
    stripBeadExtras                         html  
    varFilter                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methylumi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylumi' as methylumi_2.32.0.zip
* DONE (methylumi)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'methylumi' successfully unpacked and MD5 sums checked