Package: metaArray

Version: 1.64.0

Command: rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metaArray_1.64.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R metaArray.buildbin-libdir

StartedAt: 2020-04-15 07:59:36 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 08:00:30 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 54.0 seconds

RetCode: 0

Status:  OK

PackageFile: metaArray_1.64.0.tgz

PackageFileSize: 841.8 KiB

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### Running command:
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###   rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metaArray_1.64.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R metaArray.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metaArray.buildbin-libdir metaArray_1.64.0.tar.gz'
>>>>>>> 

* installing *source* package ‘metaArray’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c contr.c -o contr.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c dproc.c -o dproc.o
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
  int num, nr, nc;
               ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c dproc2.c -o dproc2.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c intcor.c -o intcor.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c lowess.c -o lowess.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c mmath.c -o mmath.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c perm.c -o perm.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC  -Wall -g -O2  -c poe.c -o poe.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.10-bioc/meat/metaArray.buildbin-libdir/00LOCK-metaArray/00new/metaArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metaArray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR metaArray.buildbin-libdir/metaArray/libs//metaArray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"