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INSTALL report for lfa on tokay1

This page was generated on 2020-04-15 12:25:33 -0400 (Wed, 15 Apr 2020).

Package 902/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lfa 1.16.0
Wei Hao , John D. Storey
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/lfa
Branch: RELEASE_3_10
Last Commit: 4e55fec
Last Changed Date: 2019-10-29 13:09:28 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: lfa
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/lfa_1.16.0.tar.gz && rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lfa.buildbin-libdir lfa_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL lfa_1.16.0.zip && rm lfa_1.16.0.tar.gz lfa_1.16.0.zip
StartedAt: 2020-04-14 18:39:42 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:40:12 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 29.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/lfa_1.16.0.tar.gz && rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lfa.buildbin-libdir lfa_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL lfa_1.16.0.zip && rm lfa_1.16.0.tar.gz lfa_1.16.0.zip
###
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100  203k  100  203k    0     0  1290k      0 --:--:-- --:--:-- --:--:-- 1323k

install for i386

* installing *source* package 'lfa' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fastmat.c -o fastmat.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c lfa-init.c -o lfa-init.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c lfa.c -o lfa.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c lreg.c -o lreg.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o lfa.dll tmp.def fastmat.o lfa-init.o lfa.o lreg.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/lfa.buildbin-libdir/00LOCK-lfa/00new/lfa/libs/i386
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'lfa'
    finding HTML links ... done
    af                                      html  
    af_snp                                  html  
    center                                  html  
    centerscale                             html  
    hgdp_subset                             html  
    lfa                                     html  
    model.gof                               html  
    pca_af                                  html  
    read.bed                                html  
    read.tped.recode                        html  
    sHWE                                    html  
    trunc.svd                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'lfa' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fastmat.c -o fastmat.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c lfa-init.c -o lfa-init.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c lfa.c -o lfa.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c lreg.c -o lreg.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o lfa.dll tmp.def fastmat.o lfa-init.o lfa.o lreg.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/lfa.buildbin-libdir/lfa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lfa' as lfa_1.16.0.zip
* DONE (lfa)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'lfa' successfully unpacked and MD5 sums checked