Package: imageHTS

Version: 1.36.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:imageHTS.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings imageHTS_1.36.0.tar.gz

StartedAt: 2020-04-15 00:51:40 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 00:55:10 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 210.1 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:imageHTS.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings imageHTS_1.36.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/imageHTS.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* this is package ‘imageHTS’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘imageHTS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
extractFeatures 15.300  0.084  15.495
countObjects     8.580  0.200   8.870
segmentWells     6.308  0.020   6.389
fileHTS          2.944  0.008   5.139
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.10-bioc/meat/imageHTS.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL imageHTS
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘imageHTS’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	8.58	0.20	8.87
extractFeatures	15.300	0.084	15.495
fileHTS	2.944	0.008	5.139
getImageConf	1.212	0.000	1.253
getUnames	3.344	0.000	3.452
getWellFeatures	4.180	0.000	4.315
highlightSegmentation	0	0	0
installCellPicker	2.144	0.000	2.239
makeCellHTS	0	0	0
parseDCF	0.004	0.000	0.002
parseImageConf	1.408	0.000	1.493
popCellPicker	1.344	0.000	1.355
prw2uname	0.004	0.000	0.005
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	6.308	0.020	6.389
segmentYeastBF	2.376	0.040	2.435
summarizeWells	0	0	0
zprime	3.232	0.004	3.474