Back to Multiple platform build/check report for BioC 3.10
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

INSTALL report for iCOBRA on tokay1

This page was generated on 2020-04-15 12:25:48 -0400 (Wed, 15 Apr 2020).

Package 822/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCOBRA 1.14.0
Charlotte Soneson
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/iCOBRA
Branch: RELEASE_3_10
Last Commit: 2d2d57a
Last Changed Date: 2019-10-29 13:09:30 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: iCOBRA
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/iCOBRA_1.14.0.tar.gz && rm -rf iCOBRA.buildbin-libdir && mkdir iCOBRA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCOBRA.buildbin-libdir iCOBRA_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL iCOBRA_1.14.0.zip && rm iCOBRA_1.14.0.tar.gz iCOBRA_1.14.0.zip
StartedAt: 2020-04-14 19:02:06 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:03:12 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 66.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/iCOBRA_1.14.0.tar.gz && rm -rf iCOBRA.buildbin-libdir && mkdir iCOBRA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCOBRA.buildbin-libdir iCOBRA_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL iCOBRA_1.14.0.zip && rm iCOBRA_1.14.0.tar.gz iCOBRA_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2503k  100 2503k    0     0  9488k      0 --:--:-- --:--:-- --:--:-- 9629k

install for i386

* installing *source* package 'iCOBRA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iCOBRA'
    finding HTML links ... done
    COBRAData                               html  
    COBRAPerformance                        html  
    COBRAPlot                               html  
    COBRAapp                                html  
    Extract                                 html  
    basemethods                             html  
    calculate_adjp                          html  
    calculate_performance                   html  
    cobradata_example                       html  
    cobradata_example_sval                  html  
    coerce                                  html  
    corr                                    html  
    deviation                               html  
    facetted                                html  
    fdrnbr                                  html  
    fdrnbrcurve                             html  
    fdrtpr                                  html  
    fdrtprcurve                             html  
    fpc                                     html  
    fpr                                     html  
    fsrnbr                                  html  
    fsrnbrcurve                             html  
    maxsplit                                html  
    onlyshared                              html  
    overlap                                 html  
    padj                                    html  
    plot_corr                               html  
    plot_deviation                          html  
    plot_fdrnbrcurve                        html  
    plot_fdrtprcurve                        html  
    plot_fpc                                html  
    plot_fpr                                html  
    plot_fsrnbrcurve                        html  
    plot_overlap                            html  
    plot_roc                                html  
    plot_scatter                            html  
    plot_tpr                                html  
    plot_upset                              html  
    plotcolors                              html  
    prepare_data_for_plot                   html  
    pval                                    html  
    reorder_levels                          html  
    roc                                     html  
    scatter                                 html  
    score                                   html  
    splv                                    html  
    stratiflevels                           html  
    sval                                    html  
    tpr                                     html  
    truth                                   html  
    update_cobradata                        html  
    update_cobraperformance                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iCOBRA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCOBRA' as iCOBRA_1.14.0.zip
* DONE (iCOBRA)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'iCOBRA' successfully unpacked and MD5 sums checked