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INSTALL report for flowStats on tokay1

This page was generated on 2020-04-15 12:18:49 -0400 (Wed, 15 Apr 2020).

Package 602/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowStats 3.44.0
Greg Finak and Mike Jiang
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/flowStats
Branch: RELEASE_3_10
Last Commit: 1260965
Last Changed Date: 2019-10-29 13:08:05 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowStats
Version: 3.44.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowStats_3.44.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_3.44.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowStats_3.44.0.zip && rm flowStats_3.44.0.tar.gz flowStats_3.44.0.zip
StartedAt: 2020-04-14 19:43:52 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:44:34 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 42.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowStats_3.44.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_3.44.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowStats_3.44.0.zip && rm flowStats_3.44.0.tar.gz flowStats_3.44.0.zip
###
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100 1518k  100 1518k    0     0  27.9M      0 --:--:-- --:--:-- --:--:-- 30.8M

install for i386

* installing *source* package 'flowStats' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowStats'
    finding HTML links ... done
    BackGating                              html  
    ITN                                     html  
    addName-methods                         html  
    autoGate                                html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/autoGate.Rd:21: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/autoGate.Rd:25: missing file link 'norm2Filter-class'
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/autoGate.Rd:54: missing file link 'norm2Filter-class'
    binByRef                                html  
    calcPBChiSquare                         html  
    calcPearsonChi                          html  
    curv1Filter-class                       html  
    finding level-2 HTML links ... done

    curv2Filter-class                       html  
    curvPeaks                               html  
    density1d                               html  
    fdPar                                   html  
    flowStats-package                       html  
    gate_singlet                            html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/gate_singlet.Rd:47: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
    gaussNorm                               html  
    gpaSet                                  html  
    iProcrustes                             html  
    idFeaturesByBackgating                  html  
    landmarkMatrix                          html  
    lymphGate                               html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:79: missing file link 'norm2Filter-class'
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:83: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:133: file link 'ellipsoidGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:141: missing file link 'norm2Filter-class'
    norm2Filter-class                       html  
    normQA                                  html  
    normalize                               html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/normalize.Rd:58: file link 'ncdfFlowSet' in package 'ncdfFlow' does not exist and so has been treated as a topic
    overton_like                            html  
    plotBins                                html  
    proBin                                  html  
    quadrantGate                            html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/quadrantGate.Rd:71: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/quadrantGate.Rd:79: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
    rangeGate                               html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/rangeGate.Rd:135: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/rangeGate.Rd:145: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
    spillover-flowSet                       html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/spillover-flowSet.Rd:34: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
    spillover_match-flowSet                 html  
    spillover_ng-flowSet                    html  
    warpSet                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowStats' as flowStats_3.44.0.zip
* DONE (flowStats)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'flowStats' successfully unpacked and MD5 sums checked