Back to Multiple platform build/check report for BioC 3.10
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for customProDB on tokay1

This page was generated on 2020-04-15 12:21:45 -0400 (Wed, 15 Apr 2020).

Package 394/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
customProDB 1.26.1
Xiaojing Wang
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/customProDB
Branch: RELEASE_3_10
Last Commit: b8d27af
Last Changed Date: 2020-04-12 02:39:06 -0400 (Sun, 12 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: customProDB
Version: 1.26.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/customProDB_1.26.1.tar.gz && rm -rf customProDB.buildbin-libdir && mkdir customProDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=customProDB.buildbin-libdir customProDB_1.26.1.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL customProDB_1.26.1.zip && rm customProDB_1.26.1.tar.gz customProDB_1.26.1.zip
StartedAt: 2020-04-14 20:02:52 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:03:56 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 64.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/customProDB_1.26.1.tar.gz && rm -rf customProDB.buildbin-libdir && mkdir customProDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=customProDB.buildbin-libdir customProDB_1.26.1.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL customProDB_1.26.1.zip && rm customProDB_1.26.1.tar.gz customProDB_1.26.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  438k  100  438k    0     0  6118k      0 --:--:-- --:--:-- --:--:-- 6449k

install for i386

* installing *source* package 'customProDB' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'customProDB'
    finding HTML links ... done
    Bed2Range                               html  
    InputVcf                                html  
    JunctionType                            html  
    Multiple_VCF                            html  
    OutputNovelJun                          html  
    OutputVarprocodingseq                   html  
    OutputVarproseq                         html  
    OutputVarproseq_single                  html  
    Outputaberrant                          html  
    Outputproseq                            html  
    OutputsharedPro                         html  
    Positionincoding                        html  
    PrepareAnnotationEnsembl                html  
    PrepareAnnotationRefseq                 html  
    SharedJunc                              html  
    Varlocation                             html  
    aaVariation                             html  
    calculateRPKM                           html  
    easyRun                                 html  
    easyRun_mul                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'customProDB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'customProDB' as customProDB_1.26.1.zip
* DONE (customProDB)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'customProDB' successfully unpacked and MD5 sums checked