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BUILD BIN report for cosmiq on merida1

This page was generated on 2020-04-15 12:40:10 -0400 (Wed, 15 Apr 2020).

Package 370/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cosmiq 1.20.0
David Fischer
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/cosmiq
Branch: RELEASE_3_10
Last Commit: 80fa59f
Last Changed Date: 2019-10-29 13:08:59 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: cosmiq
Version: 1.20.0
Command: rm -rf cosmiq.buildbin-libdir && mkdir cosmiq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cosmiq_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cosmiq.buildbin-libdir
StartedAt: 2020-04-15 07:12:21 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 07:13:11 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 50.6 seconds
RetCode: 0
Status:  OK 
PackageFile: cosmiq_1.20.0.tgz
PackageFileSize: 279.2 KiB

Command output

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###
### Running command:
###
###   rm -rf cosmiq.buildbin-libdir && mkdir cosmiq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cosmiq_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cosmiq.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cosmiq.buildbin-libdir cosmiq_1.20.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cosmiq’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c util.c -o util.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cosmiq.so util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.10-bioc/meat/cosmiq.buildbin-libdir/00LOCK-cosmiq/00new/cosmiq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cosmiq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cosmiq.buildbin-libdir/cosmiq/libs//cosmiq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "cosmiq.buildbin-libdir/cosmiq/libs//cosmiq.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "cosmiq.buildbin-libdir/cosmiq/libs//cosmiq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "cosmiq.buildbin-libdir/cosmiq/libs//cosmiq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "cosmiq.buildbin-libdir/cosmiq/libs//cosmiq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "cosmiq.buildbin-libdir/cosmiq/libs//cosmiq.so"