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INSTALL report for copa on tokay1

This page was generated on 2020-04-15 12:17:33 -0400 (Wed, 15 Apr 2020).

Package 359/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
copa 1.54.0
James W. MacDonald
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/copa
Branch: RELEASE_3_10
Last Commit: 8d7944f
Last Changed Date: 2019-10-29 13:07:40 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: copa
Version: 1.54.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/copa_1.54.0.tar.gz && rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copa.buildbin-libdir copa_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL copa_1.54.0.zip && rm copa_1.54.0.tar.gz copa_1.54.0.zip
StartedAt: 2020-04-14 18:37:36 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:37:56 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 19.8 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/copa_1.54.0.tar.gz && rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copa.buildbin-libdir copa_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL copa_1.54.0.zip && rm copa_1.54.0.tar.gz copa_1.54.0.zip
###
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100 12758  100 12758    0     0   369k      0 --:--:-- --:--:-- --:--:--  415k

install for i386

* installing *source* package 'copa' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c copa.c -o copa.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o copa.dll tmp.def copa.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/copa.buildbin-libdir/00LOCK-copa/00new/copa/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'copa'
    finding HTML links ... done
    copa                                    html  
    copa.package                            html  
    copaFilter                              html  
    copaPerm                                html  
    copaTable                               html  
    getans                                  html  
    pSum                                    html  
    perm.mat                                html  
    plotCopa                                html  
    scatterPlotCopa                         html  
    summaryCopa                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'copa' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c copa.c -o copa.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o copa.dll tmp.def copa.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/copa.buildbin-libdir/copa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'copa' as copa_1.54.0.zip
* DONE (copa)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'copa' successfully unpacked and MD5 sums checked