condcomp 1.4.0
Diogo P. P. Branco
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/condcomp |
| Branch: RELEASE_3_10 |
| Last Commit: 494a6a1 |
| Last Changed Date: 2019-10-29 13:11:15 -0400 (Tue, 29 Oct 2019) |
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data condcomp
###
##############################################################################
##############################################################################
* checking for file ‘condcomp/DESCRIPTION’ ... OK
* preparing ‘condcomp’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘condcomp.Rmd’ using rmarkdown
Loading required package: Matrix
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:Matrix':
which
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: ggplot2
Loading required package: VGAM
Loading required package: stats4
Loading required package: splines
Loading required package: DDRTree
Loading required package: irlba
Quitting from lines 55-70 (condcomp.Rmd)
Error: processing vignette 'condcomp.Rmd' failed with diagnostics:
unused arguments (raw.data = data, normalization.method = "LogNormalize", do.scale = TRUE, do.center = TRUE, is.expr = monocle_cds@lowerDetectionLimit)
--- failed re-building ‘condcomp.Rmd’
SUMMARY: processing the following file failed:
‘condcomp.Rmd’
Error: Vignette re-building failed.
Execution halted