Package: Xeva

Version: 1.2.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings Xeva_1.2.0.tar.gz

StartedAt: 2020-04-15 06:19:57 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 06:22:12 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 134.2 seconds

RetCode: 0

Status:  OK

CheckDir: Xeva.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings Xeva_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/Xeva.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Xeva/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Xeva’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Xeva’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 31 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.10-bioc/meat/Xeva.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL Xeva
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘Xeva’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Xeva)

name	user	system	elapsed
ABC	0.004	0.004	0.006
AUC	0.024	0.012	0.038
TGI	0.000	0.000	0.001
addExperimentalDesign	0.192	0.012	0.202
angle	0.012	0.000	0.013
batchInfo	0.220	0.012	0.231
createXevaSet	0.164	0.008	0.228
dosePlot	0.688	0.068	0.756
downloadXevaSet	0.092	0.004	0.314
drugInform	0.168	0.000	0.170
drugSensitivitySig	0.540	0.060	0.614
getExperiment	0.248	0.004	0.269
getMolecularProfiles	0.176	0.000	0.177
lmm	0.128	0.028	0.159
mRECIST	0.000	0.004	0.004
modelInfo	0.188	0.004	0.193
plotPDX	1.848	0.100	2.033
plotmRECIST	2.768	0.212	2.963
response	0.192	0.012	0.204
selectModelIds	0.260	0.028	0.315
sensitivity	0.208	0.000	0.206
setResponse	3.772	0.452	4.191
slope	0.008	0.000	0.010
subsetXeva	0.252	0.004	0.256
summarizeMolecularProfiles	0.172	0.000	0.172
summarizeResponse	0.248	0.004	0.251
waterfall	1.224	0.100	1.330