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BUILD BIN report for StructuralVariantAnnotation on tokay1

This page was generated on 2020-04-15 12:32:33 -0400 (Wed, 15 Apr 2020).

Package 1681/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
StructuralVariantAnnotation 1.2.0
Daniel Cameron
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/StructuralVariantAnnotation
Branch: RELEASE_3_10
Last Commit: 2d91969
Last Changed Date: 2019-10-29 13:11:42 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: StructuralVariantAnnotation
Version: 1.2.0
Command: rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.2.0.tar.gz
StartedAt: 2020-04-15 09:46:46 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:48:12 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 86.7 seconds
RetCode: 0
Status:  OK  
PackageFile: StructuralVariantAnnotation_1.2.0.zip
PackageFileSize: 639.1 KiB

Command output

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### Running command:
###
###   rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.2.0.tar.gz
###
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install for i386

* installing *source* package 'StructuralVariantAnnotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'StructuralVariantAnnotation'
    finding HTML links ... done
    StructuralVariantAnnotation             html  
    align_breakpoints                       html  
    breakendRanges                          html  
    breakpointGRangesToVCF                  html  
    breakpointRanges                        html  
    breakpointgr2bedpe                      html  
    calculateReferenceHomology              html  
    countBreakpointOverlaps                 html  
    dot-constrict                           html  
    dot-isSymbolic                          html  
    dot-pairwiseLCPrefix                    html  
    dot-svLen                               html  
    dot-testfile                            html  
    dot-testrecord                          html  
    dot-toVcfBreakendNotationAlt            html  
    dot-unXStringSet                        html  
    elementExtract                          html  
    extractBreakpointSequence               html  
    extractReferenceSequence                html  
    findBreakpointOverlaps                  html  
    grapes-na-grapes                        html  
    grapes-null-grapes                      html  
    isStructural                            html  
    isSymbolic                              html  
    pairs2breakpointgr                      html  
    partner                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'StructuralVariantAnnotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'StructuralVariantAnnotation' as StructuralVariantAnnotation_1.2.0.zip
* DONE (StructuralVariantAnnotation)