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INSTALL report for SingleCellExperiment on tokay1

This page was generated on 2020-04-15 12:28:42 -0400 (Wed, 15 Apr 2020).

Package 1604/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SingleCellExperiment 1.8.0
Davide Risso
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/SingleCellExperiment
Branch: RELEASE_3_10
Last Commit: 11bd3ff
Last Changed Date: 2019-10-29 13:10:32 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: SingleCellExperiment
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/SingleCellExperiment_1.8.0.tar.gz && rm -rf SingleCellExperiment.buildbin-libdir && mkdir SingleCellExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SingleCellExperiment.buildbin-libdir SingleCellExperiment_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL SingleCellExperiment_1.8.0.zip && rm SingleCellExperiment_1.8.0.tar.gz SingleCellExperiment_1.8.0.zip
StartedAt: 2020-04-14 19:38:34 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:39:17 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 43.4 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/SingleCellExperiment_1.8.0.tar.gz && rm -rf SingleCellExperiment.buildbin-libdir && mkdir SingleCellExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SingleCellExperiment.buildbin-libdir SingleCellExperiment_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL SingleCellExperiment_1.8.0.zip && rm SingleCellExperiment_1.8.0.tar.gz SingleCellExperiment_1.8.0.zip
###
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install for i386

* installing *source* package 'SingleCellExperiment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SingleCellExperiment'
    finding HTML links ... done
    LEM-combine                             html  
    LEM-getset                              html  
    LEM-misc                                html  
    LEM-subset                              html  
    LinearEmbeddingMatrix                   html  
    SCE-isSpike                             html  
    SCE-sizeFactors                         html  
    SingleCellExperiment                    html  
    finding level-2 HTML links ... done

    altExps                                 html  
    assays                                  html  
    combine                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4EI3U0/R.INSTALL3ec451b6de/SingleCellExperiment/man/combine.Rd:27: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
    internals                               html  
    miscellaneous                           html  
    reducedDims                             html  
    splitAltExps                            html  
    swapAltExp                              html  
    updateObject                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SingleCellExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SingleCellExperiment' as SingleCellExperiment_1.8.0.zip
* DONE (SingleCellExperiment)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'SingleCellExperiment' successfully unpacked and MD5 sums checked