Package: RpsiXML

Version: 2.28.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/RpsiXML_2.28.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.28.0.zip && rm RpsiXML_2.28.0.tar.gz RpsiXML_2.28.0.zip

StartedAt: 2020-04-14 18:53:12 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 18:53:49 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 37.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/RpsiXML_2.28.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.28.0.zip && rm RpsiXML_2.28.0.tar.gz RpsiXML_2.28.0.zip
###
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install for i386

* installing *source* package 'RpsiXML' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
Note: in method for 'head' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
Note: in method for 'tail' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
** help
*** installing help indices
  converting help for package 'RpsiXML'
    finding HTML links ... done
    BIOGRID.PSIMI25                         html  
    availableXrefs-methods                  html  
    availableXrefs                          html  
    bait                                    html  
    buildPCHypergraph                       html  
    complexName                             html  
    complexes                               html  
    eListHandler                            html  
    getAbstractByPMID                       html  
    graphSpeciesConverter                   html  
    interactionType                         html  
    interactions                            html  
    interactorInfo-methods                  html  
    interactorInfo                          html  
    interactors                             html  
    list2Matrix                             html  
    null2na                                 html  
    numInteractions-methods                 html  
    parsePsimi25Interaction                 html  
    psimi25Attribute-class                  html  
    psimi25Complex-class                    html  
    psimi25ComplexEntry-class               html  
    psimi25Experiment-class                 html  
    psimi25Graph-class                      html  
    psimi25Hypergraph-class                 html  
    psimi25Hypergraph2GraphNEL              html  
    psimi25Interaction-class                html  
    psimi25InteractionEntry-class           html  
    psimi25Interactor-class                 html  
    psimi25Source-class                     html  
    psimi25XML2Graph                        html  
    separateXMLDataByExpt                   html  
    sourceId-methods                        html  
    taxId-methods                           html  
    translateID-methods                     html  
    translateID                             html  
    uniprot-methods                         html  
    uniprot                                 html  
    validatePSIMI25                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
** testing if installed package can be loaded from final location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RpsiXML' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
* MD5 sums
packaged installation of 'RpsiXML' as RpsiXML_2.28.0.zip
* DONE (RpsiXML)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'RpsiXML' successfully unpacked and MD5 sums checked