James Perkins
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ReadqPCR |
| Branch: RELEASE_3_10 |
| Last Commit: 7503b70 |
| Last Changed Date: 2019-10-29 13:08:21 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:19:59 -0400 (Wed, 15 Apr 2020).
| Package 1399/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ReadqPCR 1.32.0 James Perkins
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ ERROR ] | OK | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ReadqPCR |
| Version: 1.32.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ReadqPCR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ReadqPCR_1.32.0.tar.gz |
| StartedAt: 2020-04-15 05:56:14 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 05:56:57 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 42.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: ReadqPCR.Rcheck |
| Warnings: NA |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ReadqPCR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ReadqPCR_1.32.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/ReadqPCR.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ReadqPCR/DESCRIPTION' ... OK
* this is package 'ReadqPCR' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ReadqPCR' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4MTknd/R.INSTALL11c0378b336d/ReadqPCR/man/qpcR2CyclesSet.Rd:30: file link 'reps' in package 'qpcR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4MTknd/R.INSTALL11c0378b336d/ReadqPCR/man/readLC480.Rd:61: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4MTknd/R.INSTALL11c0378b336d/ReadqPCR/man/readLC480SampleInfo.Rd:54: file link 'AnnotatedDataFrame-class' in package 'Biobase' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/ReadqPCR.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'ReadqPCR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: qpcR2CyclesSet
> ### Title: Transform a dataset from qpcR Package into CyclesSet
> ### Aliases: qpcR2CyclesSet
> ### Keywords: classes
>
> ### ** Examples
>
> library(qpcR)
Loading required package: MASS
Loading required package: minpack.lm
Loading required package: rgl
Error: package 'rgl' is not installed for 'arch = i386'
Execution halted
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/ReadqPCR.Rcheck/00check.log'
for details.
ReadqPCR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ReadqPCR_1.32.0.tar.gz && rm -rf ReadqPCR.buildbin-libdir && mkdir ReadqPCR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ReadqPCR.buildbin-libdir ReadqPCR_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ReadqPCR_1.32.0.zip && rm ReadqPCR_1.32.0.tar.gz ReadqPCR_1.32.0.zip
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install for i386
* installing *source* package 'ReadqPCR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ReadqPCR'
finding HTML links ... done
CyclesSet-class html
ReadqPCR-package html
merge html
qPCRBatch-class html
qpcR2CyclesSet html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4MTknd/R.INSTALL11c0378b336d/ReadqPCR/man/qpcR2CyclesSet.Rd:30: file link 'reps' in package 'qpcR' does not exist and so has been treated as a topic
read.qPCR html
read.taqman html
readLC480 html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4MTknd/R.INSTALL11c0378b336d/ReadqPCR/man/readLC480.Rd:61: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
readLC480SampleInfo html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4MTknd/R.INSTALL11c0378b336d/ReadqPCR/man/readLC480SampleInfo.Rd:54: file link 'AnnotatedDataFrame-class' in package 'Biobase' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
'ReadqPCR.Rnw'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ReadqPCR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ReadqPCR' as ReadqPCR_1.32.0.zip
* DONE (ReadqPCR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ReadqPCR' successfully unpacked and MD5 sums checked
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ReadqPCR.Rcheck/examples_i386/ReadqPCR-Ex.timings
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ReadqPCR.Rcheck/examples_x64/ReadqPCR-Ex.timings
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