Johannes Griss
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ReactomeGSA |
| Branch: RELEASE_3_10 |
| Last Commit: 16be774 |
| Last Changed Date: 2019-10-29 13:12:03 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:09 -0400 (Wed, 15 Apr 2020).
| Package 1396/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ReactomeGSA 1.0.0 Johannes Griss
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ReactomeGSA |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ReactomeGSA_1.0.0.tar.gz && rm -rf ReactomeGSA.buildbin-libdir && mkdir ReactomeGSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ReactomeGSA.buildbin-libdir ReactomeGSA_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ReactomeGSA_1.0.0.zip && rm ReactomeGSA_1.0.0.tar.gz ReactomeGSA_1.0.0.zip |
| StartedAt: 2020-04-14 19:21:45 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:22:26 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 41.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ReactomeGSA_1.0.0.tar.gz && rm -rf ReactomeGSA.buildbin-libdir && mkdir ReactomeGSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ReactomeGSA.buildbin-libdir ReactomeGSA_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ReactomeGSA_1.0.0.zip && rm ReactomeGSA_1.0.0.tar.gz ReactomeGSA_1.0.0.zip
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install for i386
* installing *source* package 'ReactomeGSA' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="EList"': no definition for class "EList"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="DGEList"': no definition for class "DGEList"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
converting help for package 'ReactomeGSA'
finding HTML links ... done
ReactomeAnalysisRequest html
ReactomeAnalysisResult-class html
add_dataset-ReactomeAnalysisRequest-DGEList-method
html
add_dataset-ReactomeAnalysisRequest-EList-method
html
add_dataset-ReactomeAnalysisRequest-ExpressionSet-method
html
add_dataset-ReactomeAnalysisRequest-data.frame-method
html
add_dataset html
checkRequestValidity html
check_reactome_url html
convert_reactome_result html
data_frame_as_string html
get_fc_for_dataset html
get_is_sig_dataset html
get_reactome_analysis_result html
get_reactome_analysis_status html
get_reactome_data_types html
get_reactome_methods html
get_result-ReactomeAnalysisResult-method
html
get_result html
names-ReactomeAnalysisResult-method html
open_reactome-ReactomeAnalysisResult-method
html
open_reactome html
pathways-ReactomeAnalysisResult-method
html
pathways html
perform_reactome_analysis html
plot_correlations-ReactomeAnalysisResult-method
html
plot_correlations html
plot_volcano-ReactomeAnalysisResult-method
html
plot_volcano html
print-ReactomeAnalysisRequest-method html
print-ReactomeAnalysisResult-method html
reactome_links-ReactomeAnalysisResult-method
html
reactome_links html
remove_dataset-ReactomeAnalysisRequest-method
html
remove_dataset html
result_types-ReactomeAnalysisResult-method
html
result_types html
set_method-ReactomeAnalysisRequest-method
html
set_method html
set_parameters-ReactomeAnalysisRequest-method
html
set_parameters html
show-ReactomeAnalysisRequest-method html
show-ReactomeAnalysisResult-method html
start_reactome_analysis html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ReactomeGSA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ReactomeGSA' as ReactomeGSA_1.0.0.zip
* DONE (ReactomeGSA)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ReactomeGSA' successfully unpacked and MD5 sums checked