Christopher Cabanski
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ReQON |
| Branch: RELEASE_3_10 |
| Last Commit: 2d86444 |
| Last Changed Date: 2019-10-29 13:08:23 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:20:18 -0400 (Wed, 15 Apr 2020).
| Package 1415/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ReQON 1.32.0 Christopher Cabanski
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ReQON |
| Version: 1.32.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ReQON.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ReQON_1.32.0.tar.gz |
| StartedAt: 2020-04-15 05:59:02 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:01:35 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 153.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ReQON.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ReQON.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ReQON_1.32.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/ReQON.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ReQON/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ReQON' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'ReQON' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'Rsamtools' 'seqbias'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
FWSEplot: no visible global function definition for 'title'
FWSEplot: no visible global function definition for 'rgb'
FWSEplot: no visible global function definition for 'points'
QualFreqPlot: no visible global function definition for 'title'
ReQON: no visible global function definition for 'glm.fit'
ReQON: no visible global function definition for 'binomial'
ReadPosErrorPlot: no visible global function definition for 'title'
Undefined global functions or variables:
binomial glm.fit points rgb title
Consider adding
importFrom("grDevices", "rgb")
importFrom("graphics", "points", "title")
importFrom("stats", "binomial", "glm.fit")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ReQON 22.34 1.75 27.7
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ReQON 33.83 2.11 18.91
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/ReQON.Rcheck/00check.log'
for details.
ReQON.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ReQON_1.32.0.tar.gz && rm -rf ReQON.buildbin-libdir && mkdir ReQON.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ReQON.buildbin-libdir ReQON_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ReQON_1.32.0.zip && rm ReQON_1.32.0.tar.gz ReQON_1.32.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1144k 100 1144k 0 0 23.1M 0 --:--:-- --:--:-- --:--:-- 24.8M
install for i386
* installing *source* package 'ReQON' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ReQON'
finding HTML links ... done
FWSEplot html
QualFreqPlot html
ReQON html
ReadPosErrorPlot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ReQON' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ReQON' as ReQON_1.32.0.zip
* DONE (ReQON)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ReQON' successfully unpacked and MD5 sums checked
|
ReQON.Rcheck/examples_i386/ReQON-Ex.timings
|
ReQON.Rcheck/examples_x64/ReQON-Ex.timings
|