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INSTALL report for RchyOptimyx on merida1

This page was generated on 2020-04-15 12:37:42 -0400 (Wed, 15 Apr 2020).

Package 1384/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RchyOptimyx 2.26.0
Adrin Jalali , Nima Aghaeepour
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/RchyOptimyx
Branch: RELEASE_3_10
Last Commit: 7b26205
Last Changed Date: 2019-10-29 13:08:30 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  ERROR  OK  ERROR  ERROR 
merida1 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: RchyOptimyx
Version: 2.26.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RchyOptimyx
StartedAt: 2020-04-14 18:55:37 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:56:12 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 34.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RchyOptimyx
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘RchyOptimyx’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c RchyOptimyx.cpp -o RchyOptimyx.o
In file included from RchyOptimyx.cpp:13:
./graehl/graph.h:75:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  pred = pred;                  // dummy statement to avoid warnings
  ~~~~ ^ ~~~~
In file included from RchyOptimyx.cpp:13:
In file included from ./graehl/graph.h:279:
./graehl/kbest.h:37:9: warning: explicitly assigning value of variable of type 'size_t' (aka 'unsigned long') to itself [-Wself-assign]
                dummy = dummy;
                ~~~~~ ^ ~~~~~
2 warnings generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dataRead.cpp -o dataRead.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c mystring.cpp -o mystring.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c numberGenerator.cpp -o numberGenerator.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RchyOptimyx.so RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-RchyOptimyx/00new/RchyOptimyx/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
Creating a new generic function for ‘merge’ in package ‘RchyOptimyx’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
** testing if installed package keeps a record of temporary installation path
* DONE (RchyOptimyx)