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INSTALL report for PGA on tokay1

This page was generated on 2020-04-15 12:25:05 -0400 (Wed, 15 Apr 2020).

Package 1250/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PGA 1.16.0
Bo Wen , Shaohang Xu
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/PGA
Branch: RELEASE_3_10
Last Commit: 9acdd39
Last Changed Date: 2019-10-29 13:09:20 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: PGA
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/PGA_1.16.0.tar.gz && rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL PGA_1.16.0.zip && rm PGA_1.16.0.tar.gz PGA_1.16.0.zip
StartedAt: 2020-04-14 20:03:59 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:05:13 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 73.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/PGA_1.16.0.tar.gz && rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL PGA_1.16.0.zip && rm PGA_1.16.0.tar.gz PGA_1.16.0.zip
###
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 4121k  100 4121k    0     0  24.0M      0 --:--:-- --:--:-- --:--:-- 24.5M

install for i386

* installing *source* package 'PGA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PGA'
    finding HTML links ... done
    PrepareAnnotationEnsembl2               html  
    finding level-2 HTML links ... done

    PrepareAnnotationRefseq2                html  
    addGeneName4Ensembl                     html  
    buildFusionProteinDB                    html  
    createProDB4DenovoRNASeq                html  
    dbCreator                               html  
    easyRun                                 html  
    parserGear                              html  
    reportGear                              html  
    runTandem                               html  
** building package indices
** installing vignettes
   'PGA.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PGA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PGA' as PGA_1.16.0.zip
* DONE (PGA)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'PGA' successfully unpacked and MD5 sums checked