Pedro Madrigal
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/NarrowPeaks |
| Branch: RELEASE_3_10 |
| Last Commit: 8feaaa8 |
| Last Changed Date: 2019-10-29 13:08:28 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:37:36 -0400 (Wed, 15 Apr 2020).
| Package 1133/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| NarrowPeaks 1.30.0 Pedro Madrigal
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: NarrowPeaks |
| Version: 1.30.0 |
| Command: rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir |
| StartedAt: 2020-04-15 08:10:22 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 08:11:05 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 43.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: NarrowPeaks_1.30.0.tgz |
| PackageFileSize: 428.9 KiB |
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### Running command:
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### rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir
###
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.30.0.tar.gz'
>>>>>>>
* installing *source* package ‘NarrowPeaks’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c wig2CSARScore.c -o wig2CSARScore.o
wig2CSARScore.c:240:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<x+span_c;i++){
~^~
wig2CSARScore.c:246:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
~^~
wig2CSARScore.c:267:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<x+span_c;i++){
~^~
wig2CSARScore.c:273:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
~^~
wig2CSARScore.c:352:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<start_c+span_c;i++){
~^~
wig2CSARScore.c:359:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
~^~
wig2CSARScore.c:380:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<start_c+span_c;i++){
~^~
wig2CSARScore.c:387:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
~^~
8 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NarrowPeaks.so wig2CSARScore.o wig2CSARScore_R_wrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.10-bioc/meat/NarrowPeaks.buildbin-libdir/00LOCK-NarrowPeaks/00new/NarrowPeaks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NarrowPeaks)
>>>>>>>
>>>>>>> FIXING LINKS FOR NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"