Zicheng Hu
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/MetaCyto |
| Branch: RELEASE_3_10 |
| Last Commit: ab7ea35 |
| Last Changed Date: 2019-10-29 13:10:53 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:29:27 -0400 (Wed, 15 Apr 2020).
| Package 999/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MetaCyto 1.8.0 Zicheng Hu
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MetaCyto |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaCyto.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings MetaCyto_1.8.0.tar.gz |
| StartedAt: 2020-04-15 04:35:33 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 04:47:28 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 714.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MetaCyto.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaCyto.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings MetaCyto_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/MetaCyto.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MetaCyto/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MetaCyto' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MetaCyto' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
collectData: no visible binding for global variable 'parameter_name'
collectData: no visible binding for global variable 'value'
panelSummary: no visible binding for global variable 'antibodies'
panelSummary: no visible binding for global variable 'value'
plotGA: no visible binding for global variable 'lower'
plotGA: no visible binding for global variable 'upper'
searchCluster : <anonymous>: no visible binding for global variable
'triS'
Undefined global functions or variables:
antibodies lower parameter_name triS upper value
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
autoCluster.batch 83.00 29.43 112.89
labelCluster 70.30 17.03 87.33
searchCluster.batch 19.66 6.39 26.05
flowSOM.MC 17.84 0.25 18.09
searchCluster 6.52 2.02 8.53
densityPlot 6.01 2.00 8.02
clusterStats 5.42 2.10 7.54
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
autoCluster.batch 77.28 27.67 105.00
labelCluster 65.98 20.17 86.18
searchCluster.batch 19.92 6.66 26.73
flowSOM.MC 15.25 0.17 15.42
searchCluster 6.88 2.39 9.27
clusterStats 5.99 2.22 8.21
densityPlot 5.97 2.11 8.08
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/MetaCyto.Rcheck/00check.log'
for details.
MetaCyto.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/MetaCyto_1.8.0.tar.gz && rm -rf MetaCyto.buildbin-libdir && mkdir MetaCyto.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MetaCyto.buildbin-libdir MetaCyto_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL MetaCyto_1.8.0.zip && rm MetaCyto_1.8.0.tar.gz MetaCyto_1.8.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 915k 100 915k 0 0 7498k 0 --:--:-- --:--:-- --:--:-- 7694k
install for i386
* installing *source* package 'MetaCyto' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MetaCyto'
finding HTML links ... done
autoCluster.batch html
clusterStats html
collectData html
densityPlot html
fcsInfoParser html
filterLabels html
findCutoff html
flowHC html
flowSOM.MC html
glmAnalysis html
labelCluster html
labelSummary html
markerFinder html
metaAnalysis html
nameUpdator html
panelSummary html
plotGA html
preprocessing html
preprocessing.batch html
sampleInfoParser html
searchCluster html
searchCluster.batch html
set2Frame html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MetaCyto' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MetaCyto' as MetaCyto_1.8.0.zip
* DONE (MetaCyto)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'MetaCyto' successfully unpacked and MD5 sums checked
|
MetaCyto.Rcheck/examples_i386/MetaCyto-Ex.timings
|
MetaCyto.Rcheck/examples_x64/MetaCyto-Ex.timings
|