Back to Multiple platform build/check report for BioC 3.10
ABCDEFGHIJK[L]MNOPQRSTUVWXYZ

CHECK report for LinkHD on malbec1

This page was generated on 2020-04-15 12:16:24 -0400 (Wed, 15 Apr 2020).

Package 907/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LinkHD 1.0.0
"Laura M Zingaretti"
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/LinkHD
Branch: RELEASE_3_10
Last Commit: a49d1a2
Last Changed Date: 2019-10-29 13:12:13 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: LinkHD
Version: 1.0.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings LinkHD_1.0.0.tar.gz
StartedAt: 2020-04-15 07:00:05 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 07:03:45 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 220.3 seconds
RetCode: 0
Status:  OK 
CheckDir: LinkHD.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings LinkHD_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/LinkHD.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LinkHD/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LinkHD’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LinkHD’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
OTU2Taxa-OTU2Taxa 5.324  0.096   5.428
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

LinkHD.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL LinkHD
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘LinkHD’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LinkHD)

Tests output


Example timings

LinkHD.Rcheck/LinkHD-Ex.timings

nameusersystemelapsed
Compromise_matrix-methods1.0360.0481.085
DataProcessing0.0080.0000.008
DistStatis-Class0.0000.0000.001
DistStatis-CompromisePlot0.6800.0080.693
DistStatis-CorrelationPlot0.7360.0000.734
DistStatis-GlobalPlot1.3840.0401.427
Euclid_Im-methods0.6560.0000.657
Inertia_RV-methods0.5000.0000.501
Inertia_comp-methods1.1280.0001.129
LinkData-LinkData0.5920.0000.597
OTU2Taxa-OTU2Taxa5.3240.0965.428
RQO-methods0.6080.0080.617
Read_Data000
Ruminotypes0.0000.0000.001
Taraoceans0.0000.0000.001
Trajectories-methods1.1480.1401.293
VarSelection-Class0.0000.0000.001
VarSelection2.9040.0042.914
VarTable-methods3.3720.0003.382
Var_coordinates-methods3.2800.0003.295
Variables-methods3.1320.0083.151
compromise_coords-methods0.4200.0040.423
correl-methods0.3600.0000.362
dAB-dAB1.1240.0001.127
sign_values-methods2.4360.0162.462