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BUILD BIN report for GenomicDataCommons on tokay1

This page was generated on 2020-04-15 12:28:15 -0400 (Wed, 15 Apr 2020).

Package 680/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicDataCommons 1.10.0
Sean Davis
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/GenomicDataCommons
Branch: RELEASE_3_10
Last Commit: 75d565f
Last Changed Date: 2019-10-29 13:10:21 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicDataCommons
Version: 1.10.0
Command: rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.10.0.tar.gz
StartedAt: 2020-04-15 08:48:45 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:49:17 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 31.6 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicDataCommons_1.10.0.zip
PackageFileSize: 1.05 MiB

Command output

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###
### Running command:
###
###   rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.10.0.tar.gz
###
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install for i386

* installing *source* package 'GenomicDataCommons' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicDataCommons'
    finding HTML links ... done
    GenomicDataCommons                      html  
    aggregations                            html  
    available_expand                        html  
    available_fields                        html  
    available_values                        html  
    constants                               html  
    count                                   html  
    default_fields                          html  
    dot-htseq_importer                      html  
    entity_name                             html  
    expand                                  html  
    faceting                                html  
    filtering                               html  
    gdc_cache                               html  
    gdc_client                              html  
    gdc_clinical                            html  
    gdc_rnaseq                              html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp65mePh/R.INSTALL38882d141074/GenomicDataCommons/man/gdc_rnaseq.Rd:28: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    gdc_token                               html  
    gdcdata                                 html  
    grep_fields                             html  
    id_field                                html  
    ids                                     html  
    make_filter                             html  
    manifest                                html  
    mapping                                 html  
    query                                   html  
    readDNAcopy                             html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp65mePh/R.INSTALL38882d141074/GenomicDataCommons/man/readDNAcopy.Rd:12: file link 'read_tsv' in package 'readr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp65mePh/R.INSTALL38882d141074/GenomicDataCommons/man/readDNAcopy.Rd:15: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    readHTSeqFile                           html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp65mePh/R.INSTALL38882d141074/GenomicDataCommons/man/readHTSeqFile.Rd:16: file link 'read_tsv' in package 'readr' does not exist and so has been treated as a topic
    response                                html  
    results                                 html  
    results_all                             html  
    select                                  html  
    slicing                                 html  
    status                                  html  
    transfer                                html  
    write_manifest                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomicDataCommons' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicDataCommons' as GenomicDataCommons_1.10.0.zip
* DONE (GenomicDataCommons)