Package: GOSim

Version: 1.24.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GOSim_1.24.0.tar.gz && rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GOSim_1.24.0.zip && rm GOSim_1.24.0.tar.gz GOSim_1.24.0.zip

StartedAt: 2020-04-14 20:38:12 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 20:39:02 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 50.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GOSim_1.24.0.tar.gz && rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GOSim_1.24.0.zip && rm GOSim_1.24.0.tar.gz GOSim_1.24.0.zip
###
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install for i386

* installing *source* package 'GOSim' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  `C:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"`   -O2 -Wall  -mtune=core2 -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/GOSim.buildbin-libdir/00LOCK-GOSim/00new/GOSim/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GOSim'
    finding HTML links ... done
    GOenrichment                            html  
    IC                                      html  
    calc.diffusion.kernel                   html  
    calcICs                                 html  
    evaluateClustering                      html  
    filterGO                                html  
    getAncestors                            html  
    getChildren                             html  
    getDisjCommAnc                          html  
    getGOGraph                              html  
    getGOInfo                               html  
    getGeneFeatures                         html  
    getGeneFeaturesPrototypes               html  
    getGeneSim                              html  
    getGeneSimPrototypes                    html  
    getMinimumSubsumer                      html  
    getOffsprings                           html  
    getParents                              html  
    getTermSim                              html  
    internal                                html  
    selectPrototypes                        html  
    setEnrichmentFactors                    html  
    setEvidenceLevel                        html  
    setOntology                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GOSim' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  `C:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"`   -O2 -Wall  -mtune=core2 -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/GOSim.buildbin-libdir/GOSim/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOSim' as GOSim_1.24.0.zip
* DONE (GOSim)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'GOSim' successfully unpacked and MD5 sums checked