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BUILD report for GEOmetadb on merida1

This page was generated on 2020-04-15 12:35:26 -0400 (Wed, 15 Apr 2020).

Package 694/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GEOmetadb 1.48.2
Jack Zhu
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/GEOmetadb
Branch: RELEASE_3_10
Last Commit: a353332
Last Changed Date: 2020-04-13 12:39:07 -0400 (Mon, 13 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  ERROR  OK 
merida1 OS X 10.11.6 El Capitan / x86_64  OK [ OK ] ERROR  OK 

Summary

Package: GEOmetadb
Version: 1.48.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb
StartedAt: 2020-04-14 20:01:03 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:01:20 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 17.2 seconds
RetCode: 0
Status:  OK 
PackageFile: GEOmetadb_1.48.2.tar.gz
PackageFileSize: 3.359 MiB

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb
###
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* checking for file ‘GEOmetadb/DESCRIPTION’ ... OK
* preparing ‘GEOmetadb’:
* checking DESCRIPTION meta-information ... OK
Warning: /private/tmp/RtmpDLEOsu/Rbuild77b351d0f904/GEOmetadb/man/GEOmetadb-package.Rd:52: unexpected END_OF_INPUT '
'
Warning: /private/tmp/RtmpDLEOsu/Rbuild77b351d0f904/GEOmetadb/man/columnDescriptions.Rd:34: unexpected END_OF_INPUT '
'
Warning: /private/tmp/RtmpDLEOsu/Rbuild77b351d0f904/GEOmetadb/man/geoConvert.Rd:38: unexpected section header '\keyword'
Warning: /private/tmp/RtmpDLEOsu/Rbuild77b351d0f904/GEOmetadb/man/getBiocPlatformMap.Rd:36: unexpected END_OF_INPUT '
'
Warning: /private/tmp/RtmpDLEOsu/Rbuild77b351d0f904/GEOmetadb/man/getSQLiteFile.Rd:37: unexpected section header '\keyword'
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-10_bac5b3cb3489578125f147f458235696.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-10_bac5b3cb3489578125f147f458235696.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-11_a35eca2311e24e33acbdd40171ef5fd5.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-11_a35eca2311e24e33acbdd40171ef5fd5.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-12_1d02d394d9da945c8b546239831cc096.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-12_1d02d394d9da945c8b546239831cc096.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-13_3b55479fc204d58e0bfe57d2e6278dfd.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-13_3b55479fc204d58e0bfe57d2e6278dfd.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-14_526bda04d1f1c0700d1874d6ced12d63.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-14_526bda04d1f1c0700d1874d6ced12d63.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-15_0c5c4772cb151ab7d6177b141baedf60.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-15_0c5c4772cb151ab7d6177b141baedf60.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-16_025788a0b64975935995cefe30debd5b.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-16_025788a0b64975935995cefe30debd5b.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-17_7ee09d839f54bd696c440694bb448f9a.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-17_7ee09d839f54bd696c440694bb448f9a.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-18_4e911e755e298a21d7f10bc1c90a8209.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-18_4e911e755e298a21d7f10bc1c90a8209.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-19_755eed467a896b91cb321b7b67e04c5f.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-19_755eed467a896b91cb321b7b67e04c5f.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-20_c93418c2a1e67b1a71f539276142932c.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-20_c93418c2a1e67b1a71f539276142932c.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-21_47620e9fabd31078ec1026be7a1c0634.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-21_47620e9fabd31078ec1026be7a1c0634.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-22_234c4e9e666435cc10b969b1b3005578.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-22_234c4e9e666435cc10b969b1b3005578.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-23_e2e2c375643faa99b68859e6f4245fea.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-23_e2e2c375643faa99b68859e6f4245fea.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-2_dc836ab9bd14f21b4dc745c5176fa8e1.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-2_dc836ab9bd14f21b4dc745c5176fa8e1.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-3_cba82bc491bb65152157e5620f44ee02.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-3_cba82bc491bb65152157e5620f44ee02.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-4_d75be8b59f74613ecb45a41429d4d1d2.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-4_d75be8b59f74613ecb45a41429d4d1d2.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-5_937aff47c723fbd1b92b59f5fc6c560e.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-5_937aff47c723fbd1b92b59f5fc6c560e.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-6_40acc2191c2c458a307b8e66998ee7aa.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-6_40acc2191c2c458a307b8e66998ee7aa.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-7_6640fac7f5f251ebb41bdb440bd3d123.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-7_6640fac7f5f251ebb41bdb440bd3d123.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-8_8f4101e4fe6d50c6e4c50dd0196f8873.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-8_8f4101e4fe6d50c6e4c50dd0196f8873.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-9_b33529c685c80a1c3b76bb0d8c270fad.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GEOmetadb/vignettes/GEOmetadb_cache/html/unnamed-chunk-9_b33529c685c80a1c3b76bb0d8c270fad.rdx'
* building 'GEOmetadb_1.48.2.tar.gz'