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INSTALL report for FitHiC on tokay1

This page was generated on 2020-04-15 12:27:19 -0400 (Wed, 15 Apr 2020).

Package 575/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FitHiC 1.12.0
Ruyu Tan
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/FitHiC
Branch: RELEASE_3_10
Last Commit: dd1609d
Last Changed Date: 2019-10-29 13:10:07 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: FitHiC
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/FitHiC_1.12.0.tar.gz && rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FitHiC.buildbin-libdir FitHiC_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL FitHiC_1.12.0.zip && rm FitHiC_1.12.0.tar.gz FitHiC_1.12.0.zip
StartedAt: 2020-04-14 18:41:14 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:42:15 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 61.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/FitHiC_1.12.0.tar.gz && rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FitHiC.buildbin-libdir FitHiC_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL FitHiC_1.12.0.zip && rm FitHiC_1.12.0.tar.gz FitHiC_1.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 43 26.6M   43 11.4M    0     0  69.1M      0 --:--:-- --:--:-- --:--:-- 70.2M
100 26.6M  100 26.6M    0     0  81.6M      0 --:--:-- --:--:-- --:--:-- 82.4M

install for i386

* installing *source* package 'FitHiC' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c FitHiC_init.c -o FitHiC_init.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c helper.cpp -o helper.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o FitHiC.dll tmp.def FitHiC_init.o RcppExports.o helper.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/FitHiC.buildbin-libdir/00LOCK-FitHiC/00new/FitHiC/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FitHiC'
    finding HTML links ... done
    FitHiC                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FitHiC' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c FitHiC_init.c -o FitHiC_init.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c helper.cpp -o helper.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o FitHiC.dll tmp.def FitHiC_init.o RcppExports.o helper.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/FitHiC.buildbin-libdir/FitHiC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FitHiC' as FitHiC_1.12.0.zip
* DONE (FitHiC)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'FitHiC' successfully unpacked and MD5 sums checked