Sergio Picart-Armada
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/FELLA |
| Branch: RELEASE_3_10 |
| Last Commit: 2e6d2ce |
| Last Changed Date: 2019-10-29 13:11:00 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:46:58 -0400 (Wed, 15 Apr 2020).
| Package 567/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FELLA 1.6.0 Sergio Picart-Armada
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: FELLA |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:FELLA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings FELLA_1.6.0.tar.gz |
| StartedAt: 2020-04-15 02:17:21 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 02:20:34 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 193.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: FELLA.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:FELLA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings FELLA_1.6.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/FELLA.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FELLA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FELLA’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FELLA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildGraphFromKEGGREST: no visible global function definition for
‘capture.output’
Undefined global functions or variables:
capture.output
Consider adding
importFrom("utils", "capture.output")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.10-bioc/meat/FELLA.Rcheck/00check.log’
for details.
FELLA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL FELLA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘FELLA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FELLA)
FELLA.Rcheck/tests/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(FELLA)
>
> test_check("FELLA")
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══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 168 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
22.822 4.262 52.547
FELLA.Rcheck/FELLA-Ex.timings
| name | user | system | elapsed | |
| FELLA | 0.383 | 0.043 | 0.431 | |
| FELLA.sample | 0.015 | 0.001 | 0.017 | |
| checkArguments | 0.003 | 0.000 | 0.003 | |
| data-funs | 3.116 | 0.187 | 3.378 | |
| enrich-funs | 3.050 | 0.169 | 3.251 | |
| export-funs | 0.192 | 0.005 | 0.199 | |
| getBackground | 1.756 | 0.021 | 1.829 | |
| getCom | 0.020 | 0.002 | 0.022 | |
| getExcluded | 0.022 | 0.003 | 0.026 | |
| getGraph | 0.020 | 0.001 | 0.021 | |
| getInfo | 0.019 | 0.001 | 0.021 | |
| getInput | 0.022 | 0.003 | 0.025 | |
| getMatrix | 0.029 | 0.001 | 0.034 | |
| getName | 0.020 | 0.001 | 0.029 | |
| getPscores | 0.044 | 0.003 | 0.068 | |
| getPvaluesSize | 0.039 | 0.003 | 0.042 | |
| getStatus | 0.019 | 0.001 | 0.022 | |
| getSums | 0.361 | 0.006 | 0.369 | |
| getValid | 0.034 | 0.002 | 0.039 | |
| infere.con2ec | 0.003 | 0.000 | 0.003 | |
| input.sample | 0.001 | 0.001 | 0.002 | |
| is.FELLA.DATA | 0.015 | 0.002 | 0.017 | |
| is.FELLA.USER | 0.035 | 0.002 | 0.037 | |
| largestcc | 0.019 | 0.001 | 0.021 | |
| launchApp | 0.000 | 0.000 | 0.001 | |
| listApprox | 0 | 0 | 0 | |
| listCategories | 0 | 0 | 0 | |
| listInternalDatabases | 0.001 | 0.001 | 0.001 | |
| listMethods | 0.001 | 0.000 | 0.001 | |
| mytriangle | 0.023 | 0.002 | 0.024 | |
| plotBipartite | 0.085 | 0.003 | 0.092 | |
| plotLegend | 0.030 | 0.002 | 0.033 | |
| sanitise | 0.000 | 0.000 | 0.001 | |